; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03278 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03278
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionWUSCHEL-related homeobox 3
Genome locationCarg_Chr20:2169063..2170151
RNA-Seq ExpressionCarg03278
SyntenyCarg03278
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0099402 - plant organ development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR044555 - Protein WUSCHEL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570743.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]4.6e-5666.49Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------
        MSP  AAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIK+Q       
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------

Query:  ----------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                            +TTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
Subjt:  ----------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

KAG7010589.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-67100Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTTCRNG
        MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTTCRNG
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTTCRNG

Query:  TLRTLELFPVRAGWVKEEEGGSGNGGWGN
        TLRTLELFPVRAGWVKEEEGGSGNGGWGN
Subjt:  TLRTLELFPVRAGWVKEEEGGSGNGGWGN

XP_004148244.1 WUSCHEL-related homeobox 3 [Cucumis sativus]4.1e-4958.42Show/hide
Query:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------
        ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+K+Q               
Subjt:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------

Query:  ------------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                              +TTC NGTLRTLELFPVRA WVKEEEG SGNGGWGN
Subjt:  ------------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

XP_022944088.1 putative WUSCHEL-related homeobox 2 [Cucurbita moschata]4.6e-5667.57Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------
        MSP AAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIK+Q       
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------

Query:  -------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                         +TTC NGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
Subjt:  -------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

XP_038902731.1 WUSCHEL-related homeobox 3-like [Benincasa hispida]2.1e-4860.34Show/hide
Query:  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ------------------
        TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHF +K+                   
Subjt:  TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ------------------

Query:  -------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                   +TTCRNGTLRTLELFPVRA W+KEEEG SGNGGW N
Subjt:  -------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

TrEMBL top hitse value%identityAlignment
A0A0A0KHT6 Homeobox domain-containing protein2.0e-4958.42Show/hide
Query:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------
        ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+K+Q               
Subjt:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------

Query:  ------------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                              +TTC NGTLRTLELFPVRA WVKEEEG SGNGGWGN
Subjt:  ------------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

A0A1S3CK69 WUSCHEL-related homeobox 31.3e-4857.67Show/hide
Query:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------
        ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+K+Q               
Subjt:  AAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ---------------

Query:  -----------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                             +TTC NG+LRTLELFPVR  WVKEEEG SGNGGWGN
Subjt:  -----------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

A0A248SLE7 WUSCHEL-related homeobox 39.4e-3180Show/hide
Query:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQ
        AA  SRWCPTPEQ+MILEE+YR G +TPNA+QIQ IT+HLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ   + +QQQ
Subjt:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQ

A0A6J1FXP0 putative WUSCHEL-related homeobox 22.2e-5667.57Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------
        MSP AAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIK+Q       
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQ-------

Query:  -------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
                                                         +TTC NGTLRTLELFPVRAGWVKEEEGGSGNGGWGN
Subjt:  -------------------------------------------------QTTCRNGTLRTLELFPVRAGWVKEEEGGSGNGGWGN

W9REK6 WUSCHEL-related homeobox 31.6e-3080Show/hide
Query:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQ
        AA  SRWCPTPEQ+MILEE+YR G +TPNA+QIQ IT+HLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQ   +  QQQ
Subjt:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQ

SwissProt top hitse value%identityAlignment
A2XZR3 Putative WUSCHEL-related homeobox 27.1e-2875Show/hide
Query:  AAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL
        +  AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L
Subjt:  AAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL

Q5W7C3 Putative WUSCHEL-related homeobox 27.1e-2875Show/hide
Query:  AAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL
        +  AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L
Subjt:  AAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL

Q6S3I3 WUSCHEL-related homeobox 3B4.6e-2768.24Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQT
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ +   +QQ T
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQT

Q70UV1 WUSCHEL-related homeobox 3A7.9e-2768.6Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTT
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ +    QQQ T
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTT

Q9SIB4 WUSCHEL-related homeobox 32.9e-2967.71Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKQQQ
        MSP A+       +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ QQ
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKQQQ

Arabidopsis top hitse value%identityAlignment
AT1G46480.1 WUSCHEL related homeobox 43.9e-2148.18Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF----IKQQQTTCRNGTLRTLELFP
        +RW PT EQ+ ILE +Y+ G++TPNA QI+HIT  L  YGKIEGKNVFYWFQNHKAR+RQK +R     L     F    +     T +  T  +L++  
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF----IKQQQTTCRNGTLRTLELFP

Query:  VRAGWVKEEE
        +R   V++EE
Subjt:  VRAGWVKEEE

AT2G01500.1 Homeodomain-like superfamily protein1.5e-2065.22Show/hide
Query:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        AA   RW PTPEQ+  LEE+YR+G +TP   QIQ I S L  YG+IEGKNVFYWFQNHKAR+R K RR+
Subjt:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK

AT2G28610.1 Homeodomain-like superfamily protein2.1e-3067.71Show/hide
Query:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKQQQ
        MSP A+       +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ QQ
Subjt:  MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKQQQ

AT3G11260.1 WUSCHEL related homeobox 56.0e-2250Show/hide
Query:  RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHH--------FFIKQQQTTCRNGTLRTLE
        RW PT EQ+ IL +++R GL+TP   QIQ I++ LS YGKIE KNVFYWFQNHKAR+RQK RRK+      HH        F I ++        + TL+
Subjt:  RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHH--------FFIKQQQTTCRNGTLRTLE

Query:  LFPVRA
        LFPV +
Subjt:  LFPVRA

AT3G18010.1 WUSCHEL related homeobox 14.6e-2268.18Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL
        SRW PTP+Q+ +LEE+YR G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNHKAR+RQK RR++
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCGGCGGCGGCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCC
CAATGCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGACCGCCAGA
AGCTGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACAACAGCAGACGACATGTCGTAATGGGACGCTGAGGACGTTGGAGCTGTTTCCGGTG
AGGGCAGGGTGGGTGAAGGAGGAGGAAGGCGGGAGTGGGAACGGTGGATGGGGGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCGGCGGCGGCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCC
CAATGCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGACCGCCAGA
AGCTGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACAACAGCAGACGACATGTCGTAATGGGACGCTGAGGACGTTGGAGCTGTTTCCGGTG
AGGGCAGGGTGGGTGAAGGAGGAGGAAGGCGGGAGTGGGAACGGTGGATGGGGGAATTAG
Protein sequenceShow/hide protein sequence
MSPAAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKQQQTTCRNGTLRTLELFPV
RAGWVKEEEGGSGNGGWGN