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Carg03323 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03323
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionflowering-promoting factor 1-like
Genome locationCarg_Chr20:1956867..1957256
RNA-Seq ExpressionCarg03323
SyntenyCarg03323
Gene Ontology termsGO:0009909 - regulation of flower development (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR039274 - Flowering-promoting factor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4282452.1 unnamed protein product [Prunus armeniaca]1.4e-5283.74Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGVARLI+NPTRESFE K+PPYPGTATAPGARPRVLVYLP NQVIRSY+ELEQRL ELGW+RY NS  PDLLQFHRS  SA LISLP +FA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDP
         FK +HMYDIVVKNR FFEVRDP
Subjt:  KFKPMHMYDIVVKNRHFFEVRDP

KAG5238222.1 flowering-promoting factor [Salix suchowensis]1.1e-5280.16Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGV RL++NPTRESFE K+PP+PGTATAPGARPRVLVYLP N VIRSY ELEQRL ELGWSRY NS++P+LLQFH+S DSAHLISLPK+F 
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDPKSS
         FK +HMYDIVVKNR FFEVRDP +S
Subjt:  KFKPMHMYDIVVKNRHFFEVRDPKSS

KAG6570697.1 Flowering-promoting factor 1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-69100Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDPKSSHPS
        KFKPMHMYDIVVKNRHFFEVRDPKSSHPS
Subjt:  KFKPMHMYDIVVKNRHFFEVRDPKSSHPS

KAG6760852.1 hypothetical protein POTOM_034035 [Populus tomentosa]8.1e-5380.16Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGVARLI+NPTRESFE K+PP+PGTATAPGARPRVLVYLP N VIRSY ELEQRL ELGW+RY NS +P+LLQFH+S DS HLISLP+ F 
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDPKSS
         FKP+HMYDIVVKNR FFEVRDP +S
Subjt:  KFKPMHMYDIVVKNRHFFEVRDPKSS

XP_022148408.1 flowering-promoting factor 1-like [Momordica charantia]4.9e-5888.55Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRN-SAEP-DLLQFHRSHDSAHLISLPKS
        MSGVWVFDKNGVARLI+NPTRESFE KDPPYPGTATAPGARPRVLVYLP NQVI SYAELEQRLGELGW+RYRN SAEP +L++FHRSHDSA LISLPKS
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRN-SAEP-DLLQFHRSHDSAHLISLPKS

Query:  FAKFKPMHMYDIVVKNRHFFEVRDPKSSHPS
        FAKFKPMHMYDIVVKNRHFF+VRDPKS+  S
Subjt:  FAKFKPMHMYDIVVKNRHFFEVRDPKSSHPS

TrEMBL top hitse value%identityAlignment
A0A0A0KE84 Uncharacterized protein1.9e-6393.02Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVFDKNGVARLISNPTRESFECKDPP+PGTATAPGARPRVLVYLPTNQVIRSYAELEQRL ELGW+RY N AEPDLLQFHRSHDSAHLISLPKSFA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDPKSSHPS
        KFKPMHMYDIVVKNRHFF+VRDP SS  S
Subjt:  KFKPMHMYDIVVKNRHFFEVRDPKSSHPS

A0A1Q3CDF3 Uncharacterized protein6.7e-5380.95Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGVARLI+NPTRESFE K+PPYPGTATAPGARPRVLVYLP NQVIRSYAELEQRL ELGW+RY N  +P+LLQFH+S +SAHLISLPK+FA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDPKSS
         FK +HMYDIVVKNR  FEVRDP ++
Subjt:  KFKPMHMYDIVVKNRHFFEVRDPKSS

A0A6J1D405 flowering-promoting factor 1-like2.4e-5888.55Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRN-SAEP-DLLQFHRSHDSAHLISLPKS
        MSGVWVFDKNGVARLI+NPTRESFE KDPPYPGTATAPGARPRVLVYLP NQVI SYAELEQRLGELGW+RYRN SAEP +L++FHRSHDSA LISLPKS
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRN-SAEP-DLLQFHRSHDSAHLISLPKS

Query:  FAKFKPMHMYDIVVKNRHFFEVRDPKSSHPS
        FAKFKPMHMYDIVVKNRHFF+VRDPKS+  S
Subjt:  FAKFKPMHMYDIVVKNRHFFEVRDPKSSHPS

A0A6J5V2H6 Uncharacterized protein6.7e-5383.74Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGVARLI+NPTRESFE K+PPYPGTATAPGARPRVLVYLP NQVIRSY+ELEQRL ELGW+RY NS  PDLLQFHRS  SA LISLP +FA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDP
         FK +HMYDIVVKNR FFEVRDP
Subjt:  KFKPMHMYDIVVKNRHFFEVRDP

M5WHZ4 Uncharacterized protein6.7e-5383.74Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVW+FDKNGVARLI+NPTRESFE K+PPYPGTATAPGARPRVLVYLP NQVIRSY+ELEQRL ELGW+RY NS  PDLLQFHRS  SA LISLP +FA
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRDP
         FK +HMYDIVVKNR FFEVRDP
Subjt:  KFKPMHMYDIVVKNRHFFEVRDP

SwissProt top hitse value%identityAlignment
O23624 Flowering-promoting factor 11.9e-2550Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVF KNGV RL+ NP +   + ++            R +V+VYLPT +V+ SY+ LEQ L  LGW RY    + DLLQFH+   S  LISLP+ F 
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRD
        KF  ++MYDIVVKN ++F VRD
Subjt:  KFKPMHMYDIVVKNRHFFEVRD

O24340 Flowering-promoting factor 11.9e-2551.64Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVF KNGV RL+ NP +   +              +R +V+VYLPT +VI SY+ LEQ L  LGW RY    + DLLQFH+   S  LISLPK F 
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRD
        KF  ++MYDIVVKN ++F VRD
Subjt:  KFKPMHMYDIVVKNRHFFEVRD

Q0E1D7 Flowering-promoting factor 1-like protein 34.8e-2450.41Show/hide
Query:  MSGVWVFDKNGVARLISNP-TRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSF
        M+GVWVF K+G+ R + NP + ES    D          G R +VLV++P+ +V+ SY  LE+RL ELGW RY    +P LLQFH+   + HLIS+P+ F
Subjt:  MSGVWVFDKNGVARLISNP-TRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSF

Query:  AKFKPMHMYDIVVKNRHFFEVRD
        +KFK +HMYDIVVK R+ FEVRD
Subjt:  AKFKPMHMYDIVVKNRHFFEVRD

Q5Q0B3 Flowering-promoting factor 1-like protein 11.6e-2449.19Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESF-ECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPD-LLQFHRSHDSAHLISLPKS
        MSGVWVF+KNGV RL+ NP  +S  +  +    G       R ++LV+LP+++V+ SY  LE+ L  LGW RY +    D LLQFH+   S  LISLP+ 
Subjt:  MSGVWVFDKNGVARLISNPTRESF-ECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPD-LLQFHRSHDSAHLISLPKS

Query:  FAKFKPMHMYDIVVKNRHFFEVRD
        F+KF  +HMYDIVVKN + F VRD
Subjt:  FAKFKPMHMYDIVVKNRHFFEVRD

Q9LXB5 Flowering-promoting factor 1-like protein 21.4e-2350Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVF+ NGV RL+ NP +           G +T    R  VLVYLPT + + SY+ LEQ L  LGW RY  S + DL+Q+H+   S  LISLP+ F+
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRD
        KF  ++MYDIVVKN + F VRD
Subjt:  KFKPMHMYDIVVKNRHFFEVRD

Arabidopsis top hitse value%identityAlignment
AT4G31380.1 FPF1-like protein 11.2e-2549.19Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESF-ECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPD-LLQFHRSHDSAHLISLPKS
        MSGVWVF+KNGV RL+ NP  +S  +  +    G       R ++LV+LP+++V+ SY  LE+ L  LGW RY +    D LLQFH+   S  LISLP+ 
Subjt:  MSGVWVFDKNGVARLISNPTRESF-ECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPD-LLQFHRSHDSAHLISLPKS

Query:  FAKFKPMHMYDIVVKNRHFFEVRD
        F+KF  +HMYDIVVKN + F VRD
Subjt:  FAKFKPMHMYDIVVKNRHFFEVRD

AT5G10625.1 BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1)9.9e-2550Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVF+ NGV RL+ NP +           G +T    R  VLVYLPT + + SY+ LEQ L  LGW RY  S + DL+Q+H+   S  LISLP+ F+
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRD
        KF  ++MYDIVVKN + F VRD
Subjt:  KFKPMHMYDIVVKNRHFFEVRD

AT5G24860.1 flowering promoting factor 11.4e-2650Show/hide
Query:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA
        MSGVWVF KNGV RL+ NP +   + ++            R +V+VYLPT +V+ SY+ LEQ L  LGW RY    + DLLQFH+   S  LISLP+ F 
Subjt:  MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFA

Query:  KFKPMHMYDIVVKNRHFFEVRD
        KF  ++MYDIVVKN ++F VRD
Subjt:  KFKPMHMYDIVVKNRHFFEVRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGGTGTTTGGGTGTTCGACAAAAATGGCGTGGCCCGTTTAATATCGAACCCAACCAGGGAGTCGTTCGAGTGCAAGGACCCGCCCTATCCAGGGACCGCGACGGC
GCCAGGGGCTCGCCCTAGAGTCCTGGTCTATCTCCCAACCAACCAAGTCATCCGCTCCTACGCCGAACTCGAGCAGCGACTGGGCGAACTCGGGTGGAGCCGGTACCGGA
ATTCAGCCGAACCGGACCTCCTCCAATTCCACCGCTCCCATGACTCCGCCCACTTGATCTCCCTCCCCAAAAGCTTCGCCAAATTCAAGCCCATGCACATGTACGACATT
GTCGTTAAAAATCGTCATTTCTTTGAAGTTCGTGACCCCAAATCATCGCACCCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGGTGTTTGGGTGTTCGACAAAAATGGCGTGGCCCGTTTAATATCGAACCCAACCAGGGAGTCGTTCGAGTGCAAGGACCCGCCCTATCCAGGGACCGCGACGGC
GCCAGGGGCTCGCCCTAGAGTCCTGGTCTATCTCCCAACCAACCAAGTCATCCGCTCCTACGCCGAACTCGAGCAGCGACTGGGCGAACTCGGGTGGAGCCGGTACCGGA
ATTCAGCCGAACCGGACCTCCTCCAATTCCACCGCTCCCATGACTCCGCCCACTTGATCTCCCTCCCCAAAAGCTTCGCCAAATTCAAGCCCATGCACATGTACGACATT
GTCGTTAAAAATCGTCATTTCTTTGAAGTTCGTGACCCCAAATCATCGCACCCTTCTTAA
Protein sequenceShow/hide protein sequence
MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFAKFKPMHMYDI
VVKNRHFFEVRDPKSSHPS