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Carg03338 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03338
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTropomyosin
Genome locationCarg_Chr20:1886185..1889711
RNA-Seq ExpressionCarg03338
SyntenyCarg03338
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]3.5e-3462.37Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6283.42Show/hide
Query:  MFKALKDVAMEKDAAVVAQ------------RQLAKEQNRAESLSAEALE-----------------LLDKGTHEEDISREGSSTMESSKICFCIPRHKN
        MFKALKDVAMEKDAAVVAQ            RQLAKEQNRAE+LSAEALE                 LLDKGTHEEDISREGSSTMESSKICFCIPRHKN
Subjt:  MFKALKDVAMEKDAAVVAQ------------RQLAKEQNRAESLSAEALE-----------------LLDKGTHEEDISREGSSTMESSKICFCIPRHKN

Query:  SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
        SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGNTG ASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
Subjt:  SHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3057.14Show/hide
Query:  QLAKEQNRAESLSAEALEL----------------------------------------------LDKGTHEEDISREGSSTMESSKICFCIPRHKNSHK
        QLAKEQ+RAE LSAE LEL                                               + G +EE+ISRE SSTMESSKICFCIPRHKN  K
Subjt:  QLAKEQNRAESLSAEALEL----------------------------------------------LDKGTHEEDISREGSSTMESSKICFCIPRHKNSHK

Query:  VDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAV-TAVTMDAVD--EDDGGSTHVHGGEGGGGGGGD
         DGGSEKSSKSKPSRRKS   AK GKHS SSDSSG+GNTGDA+ + ++AAVAA+AV  A T+ AVD  EDDGGS+H HGGEGGGGGGGD
Subjt:  VDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAV-TAVTMDAVD--EDDGGSTHVHGGEGGGGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-70100Show/hide
Query:  MFKALKDVAMEKDAAVVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS
        MFKALKDVAMEKDAAVVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS
Subjt:  MFKALKDVAMEKDAAVVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS

Query:  SSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
        SSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
Subjt:  SSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]3.5e-3462.37Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.2e-2783.33Show/hide
Query:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G G
Subjt:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGG

Query:  GD
        GD
Subjt:  GD

A0A5A7V5U9 Tropomyosin1.7e-3462.37Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

A0A5D3CVK1 Tropomyosin1.7e-3462.37Show/hide
Query:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH
        QLAKE++RAESLSAE LEL   L + T                                           +EEDISRE SSTME SSKICFCIPRHKN H
Subjt:  QLAKEQNRAESLSAEALEL---LDKGT-------------------------------------------HEEDISREGSSTME-SSKICFCIPRHKNSH

Query:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        K DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  KVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

A0A6J1D515 circumsporozoite protein-like4.4e-2275.23Show/hide
Query:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNG--NTGDASAAGSAAAVAAIAV---TAVTMDAVDEDDGGSTHVHGG
        MES+KICFCIPRHKN HK +GGSEKSSKSKPSRRKS  G K GKHSSSSDSSG+G  NTG A+  GS AAVAA+ V   TA TMDAV EDDGGS H HGG
Subjt:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNG--NTGDASAAGSAAAVAAIAV---TAVTMDAVDEDDGGSTHVHGG

Query:  EGGGGGGGD
         GG GGGGD
Subjt:  EGGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAAAGCTCTCAAAGATGTAGCCATGGAGAAAGATGCAGCAGTTGTTGCCCAACGCCAACTTGCAAAAGAACAGAACAGAGCAGAGTCGCTATCAGCAGAAGCATT
GGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACA
AAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAAC
ACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGAGGATGATGGTGGCAGCACTCATGTCCA
TGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGAT
mRNA sequenceShow/hide mRNA sequence
AATTTGCCATGGACGCTCGCCACGCATCTCTAGGTCGACGAACGCTAAGAACTTTTTGCTTGTTCGCATTCTTGCGCACCATAATGCCTTCAGCGTGTTTGTGAAATTCG
GCAAAAGAGAGCGGCCGAGAGATTGAGCTAAGCTTCTTCCGGACCAGATCTGACCGCAGCCTCCAAATCAAATGAAACTTCTGGTGTTAGAAAAATCAGAGAGCGGAAGT
CGATTCTCAGAGGAGACGAACACTGTACCATGTTTAAAGCTCTCAAAGATGTAGCCATGGAGAAAGATGCAGCAGTTGTTGCCCAACGCCAACTTGCAAAAGAACAGAAC
AGAGCAGAGTCGCTATCAGCAGAAGCATTGGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTT
CTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCT
CTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGAT
GAGGATGATGGTGGCAGCACTCATGTCCATGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGAT
Protein sequenceShow/hide protein sequence
MFKALKDVAMEKDAAVVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGN
TGDASAAGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD