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Carg03342 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03342
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCarg_Chr20:1862416..1864294
RNA-Seq ExpressionCarg03342
SyntenyCarg03342
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570678.1 hypothetical protein SDJN03_29593, partial [Cucurbita argyrosperma subsp. sororia]6.9e-5399.1Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG
        MSVANRSAISGALHFSRLSSTYTRSFT SSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG

Query:  DSDPSAEVQTS
        DSDPSAEVQTS
Subjt:  DSDPSAEVQTS

KAG7010525.1 hypothetical protein SDJN02_27319, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-53100Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG
        MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSG

Query:  DSDPSAEVQTS
        DSDPSAEVQTS
Subjt:  DSDPSAEVQTS

XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]4.0e-3257.93Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        M+VANR+AIS AL FSRLSS++ R+F+ SSPS S+ NPNA   S++ KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP SG+S  SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

XP_022944512.1 uncharacterized protein LOC111448948 [Cucurbita moschata]3.8e-4369.66Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        MSVANRSAISGALHFSRLSS++TRSFT SSPSPSTPNPNAP ASTK KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        +AHKDGT IAEAPKKISGVHKRCWKYIASLP SGDSDPSAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]3.8e-3562.24Show/hide
Query:  VANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWGIA
        VANR+AIS AL FSRLSST+ R+F+ SSPS S+ NPNA  ASTK KRRKKK                                  NL+++GTHGKAWGIA
Subjt:  VANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWGIA

Query:  HKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        HKDGTPIAEAPKKISGVHKRCWKYIASLP SG+S+PSAEVQTS
Subjt:  HKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein1.9e-3257.93Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        M+VANR+AIS AL FSRLSS++ R+F+ SSPS S+ NPNA   S++ KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP SG+S  SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

A0A1S3CKN2 uncharacterized protein LOC1035020491.6e-3157.24Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        M+VANR+AIS AL FSRLSS++ R+FT SSPS S+ NPNA  +S++ KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        IAHK+G PI EAPKKISGVHKRCWKYIASLP  G+S  SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein1.6e-3157.24Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        M+VANR+AIS AL FSRLSS++ R+FT SSPS S+ NPNA  +S++ KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        IAHK+G PI EAPKKISGVHKRCWKYIASLP  G+S  SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169881.5e-2954.55Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        MSVANR+AI+ AL FS+LSST+ R+F+ SSPS S+ NPNA AAS+ IKRRKKK                                  NL+++G HGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIA------SLPS---SGDSDPSAEVQTS
        IAHKDG PIAEAPKKISGVHKRCW+YIA      S+P+   S +S+PSAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIA------SLPS---SGDSDPSAEVQTS

A0A6J1FVV3 uncharacterized protein LOC1114489481.8e-4369.66Show/hide
Query:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG
        MSVANRSAISGALHFSRLSS++TRSFT SSPSPSTPNPNAP ASTK KRRKKK                                  NL++SGTHGKAWG
Subjt:  MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKK----------------------------------NLFESGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS
        +AHKDGT IAEAPKKISGVHKRCWKYIASLP SGDSDPSAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein6.5e-1742.97Show/hide
Query:  RLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFE---------------------------------SGTHGKAWGIAHKDGTPIAEAPKKIS
        RLS    R+F   S +P++ NP++   S+K KRRKKKNL E                                  G HGKAWGI HKDG   AEAPKKIS
Subjt:  RLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFE---------------------------------SGTHGKAWGIAHKDGTPIAEAPKKIS

Query:  GVHKRCWKYIASLPSSGDSDPSAEVQTS
        GVHKRCWKYI +L  +  +  SA VQ +
Subjt:  GVHKRCWKYIASLPSSGDSDPSAEVQTS

AT5G58990.1 unknown protein8.5e-1741.41Show/hide
Query:  LSSTYTRSFTISSPSPSTPNPNAPAA-STKIKRRKKKNLFE---------------------------------SGTHGKAWGIAHKDGTPIAEAPKKIS
        LS +  R+F+ +  + STP    P++ S K KRRKKKNL E                                  G HGKAWGI HKDG   AEAPKKIS
Subjt:  LSSTYTRSFTISSPSPSTPNPNAPAA-STKIKRRKKKNLFE---------------------------------SGTHGKAWGIAHKDGTPIAEAPKKIS

Query:  GVHKRCWKYIASLPSSGDSDPSAEVQTS
        GVHKRCWKYI +L  +  +  +A+VQ +
Subjt:  GVHKRCWKYIASLPSSGDSDPSAEVQTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCGCCAACAGAAGTGCGATCAGTGGAGCCCTACATTTCTCCCGGTTATCTTCTACCTATACCAGAAGCTTCACCATCTCTTCGCCGTCTCCCTCCACTCCGAA
CCCCAATGCCCCGGCTGCTTCGACTAAAATCAAGCGGAGGAAGAAGAAGAACCTGTTCGAAAGTGGCACGCATGGCAAGGCATGGGGCATTGCTCATAAAGATGGCACGC
CTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTACCGAGTTCGGGAGACAGCGACCCATCAGCTGAAGTTCAAACT
TCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCGCCAACAGAAGTGCGATCAGTGGAGCCCTACATTTCTCCCGGTTATCTTCTACCTATACCAGAAGCTTCACCATCTCTTCGCCGTCTCCCTCCACTCCGAA
CCCCAATGCCCCGGCTGCTTCGACTAAAATCAAGCGGAGGAAGAAGAAGAACCTGTTCGAAAGTGGCACGCATGGCAAGGCATGGGGCATTGCTCATAAAGATGGCACGC
CTATCGCAGAAGCTCCGAAGAAGATCAGTGGCGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTACCGAGTTCGGGAGACAGCGACCCATCAGCTGAAGTTCAAACT
TCATGA
Protein sequenceShow/hide protein sequence
MSVANRSAISGALHFSRLSSTYTRSFTISSPSPSTPNPNAPAASTKIKRRKKKNLFESGTHGKAWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPSSGDSDPSAEVQT
S