CuGenDBv2

Gene ID	Carg03355
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Thylakoid soluble phosphoprotein TSP
Genome location	Carg_Chr20:1801498..1801776
RNA-Seq Expression	Carg03355
Synteny	Carg03355
Gene Ontology terms	NA
InterPro domains	IPR021584 - Thylakoid soluble phosphoprotein TSP9 IPR037244 - Thylakoid soluble phosphoprotein TSP9 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010512.1 hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-41

100

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD

XP_004143212.1 uncharacterized protein LOC101205268 [Cucumis sativus]

1.2e-34

87.63

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNSVQVPPKKN-GGFGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD+ S    G+V GGRKNSVQVPPKKN GGFGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNSVQVPPKKN-GGFGGLFAKRD

XP_008464052.1 PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo]

4.6e-34

86.46

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD  SG  +G   GRKNSVQ+PPKKNGG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD

XP_023532336.1 uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]

3.9e-33

82.11

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD
        MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G +E+DQLLETDPVLQKVEGK+   +N GTV GG+KNSVQVPPKKNG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD

XP_038901860.1 uncharacterized protein LOC120088545 [Benincasa hispida]

3.9e-33

86.46

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGK---DSNSGTVSGGRKNSVQVPPKKN-GGFGGLFAKRD
        MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSL +DQLLETDPVLQKVEGK    + SGTV GGRKNSVQVPPKKN GGFGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGK---DSNSGTVSGGRKNSVQVPPKKN-GGFGGLFAKRD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KC59 Uncharacterized protein

5.8e-35

87.63

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNSVQVPPKKN-GGFGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD+ S    G+V GGRKNSVQVPPKKN GGFGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNSVQVPPKKN-GGFGGLFAKRD

A0A1S3CKK5 uncharacterized protein LOC103502033

2.2e-34

86.46

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD  SG  +G   GRKNSVQ+PPKKNGG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD

A0A5A7V5S9 Uncharacterized protein

2.2e-34

86.46

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD
        MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD  SG  +G   GRKNSVQ+PPKKNGG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSG---GRKNSVQVPPKKNGG-FGGLFAKRD

A0A6J1G777 uncharacterized protein LOC111451452

5.5e-33

81.05

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G +E+DQLLETDPVLQKVEGK+   +N GTV GG+KNSVQVPPKKNG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD

A0A6J1L2X7 uncharacterized protein LOC111499927

5.5e-33

81.05

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD
        MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G +E+DQLLETDPVLQKVEGK+   +N GTV GG+KNSVQVPPKKNG FGGLFAK+D
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD---SNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G47070.1 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.6e-11

40.86

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Query:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL-ERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNS-VQVPPKKNGGFGGL
        ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + ++DQ  ET+P+L+KV+ K+  +    GTV GG+ ++   VP K  GGFGGL
Subjt:  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL-ERDQLLETDPVLQKVEGKDSNS----GTVSGGRKNS-VQVPPKKNGGFGGL

Sequences

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CDS sequence

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ATGGCTTCTCTTCCGATCGCATTCTCTCCGGCTGCCGGACGCGTGTTCGCAGCCACGGCGGCGAAGGGCGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGAT
CATCGGAAGCTTGGAGAGGGATCAGCTTCTCGAAACCGACCCTGTTCTTCAAAAGGTCGAGGGCAAGGACAGTAACAGCGGCACCGTCAGTGGCGGCCGGAAGAATTCCG
TCCAAGTCCCGCCGAAAAAGAACGGCGGGTTCGGTGGTCTCTTTGCCAAGAGAGACTGA

mRNA sequence

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Protein sequence

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MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKDSNSGTVSGGRKNSVQVPPKKNGGFGGLFAKRD

Carg03355 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome