; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03383 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03383
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/LRR-repeat protein 3-like
Genome locationCarg_Chr20:1623373..1625599
RNA-Seq ExpressionCarg03383
SyntenyCarg03383
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570630.1 F-box/LRR-repeat protein 3, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4382.93Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL---------------------AAAGSPATRFSLAARTPKRQSRPS
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL                     AAAGSPATRFSLAARTPKRQSRPS
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL---------------------AAAGSPATRFSLAARTPKRQSRPS

Query:  PGARCERFDSTRGPQQRATCVLM
        PGARCERFDSTRGPQQRATCVLM
Subjt:  PGARCERFDSTRGPQQRATCVLM
KAG7010484.1 F-box/LRR-repeat protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-48100Show/hide
Query:  MSLINLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFSLAARTPKRQSRPSPGARCERFDSTRGPQQRA
        MSLINLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFSLAARTPKRQSRPSPGARCERFDSTRGPQQRA
Subjt:  MSLINLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFSLAARTPKRQSRPSPGARCERFDSTRGPQQRA

Query:  TCVLM
        TCVLM
Subjt:  TCVLM
XP_022944190.1 F-box/LRR-repeat protein 3-like isoform X1 [Cucurbita moschata]3.3e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
XP_022986786.1 F-box/LRR-repeat protein 3-like isoform X1 [Cucurbita maxima]3.3e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
XP_023512790.1 F-box/LRR-repeat protein 3-like isoform X1 [Cucurbita pepo subsp. pepo]3.3e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
TrEMBL top hitse value%identityAlignment
A0A6J1D7C8 F-box/LRR-repeat protein 3-like6.7e-1983.33Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFS
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTP+GLTAALLVCG LRKVKLHL+        FS
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFS
A0A6J1FV45 F-box/LRR-repeat protein 3-like isoform X21.6e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
A0A6J1FYI6 F-box/LRR-repeat protein 3-like isoform X11.6e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
A0A6J1JH24 F-box/LRR-repeat protein 3-like isoform X21.6e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
A0A6J1JHJ8 F-box/LRR-repeat protein 3-like isoform X11.6e-2098.21Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
        INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHL+
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLA
SwissProt top hitse value%identityAlignment
Q8RWU5 F-box/LRR-repeat protein 31.1e-1061.11Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLH
        IN+S  +VT+VGLLSLA+I CL+N+ +++ +GL P G+ AALL CGGLRK KLH
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLH
Arabidopsis top hitse value%identityAlignment
AT5G01720.1 RNI-like superfamily protein7.8e-1261.11Show/hide
Query:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLH
        IN+S  +VT+VGLLSLA+I CL+N+ +++ +GL P G+ AALL CGGLRK KLH
Subjt:  INLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTGATAAACTTGTCATACTGTTCGGTTACAGATGTTGGGCTATTGTCTCTAGCTAGCATTAATTGCCTGAGAAACATGACCATCTTGCATTTGGCTGGCTTGAC
TCCAGATGGCCTCACTGCCGCCCTGCTGGTATGTGGCGGTCTAAGAAAAGTGAAGCTGCACTTGGCTGCTGCTGGTTCTCCTGCTACCCGTTTCTCGCTTGCAGCACGCA
CCCCCAAACGCCAAAGCAGGCCTTCTCCCGGGGCAAGATGCGAGAGATTCGACTCAACACGGGGTCCGCAACAGAGGGCGACCTGTGTATTGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTGATAAACTTGTCATACTGTTCGGTTACAGATGTTGGGCTATTGTCTCTAGCTAGCATTAATTGCCTGAGAAACATGACCATCTTGCATTTGGCTGGCTTGAC
TCCAGATGGCCTCACTGCCGCCCTGCTGGTATGTGGCGGTCTAAGAAAAGTGAAGCTGCACTTGGCTGCTGCTGGTTCTCCTGCTACCCGTTTCTCGCTTGCAGCACGCA
CCCCCAAACGCCAAAGCAGGCCTTCTCCCGGGGCAAGATGCGAGAGATTCGACTCAACACGGGGTCCGCAACAGAGGGCGACCTGTGTATTGATGTAGATGACCATATGT
TTGAAAATATGAACACTTGATAAAGCTGTAAATTTGTTGCTTCGGAAACTGTGAGAAAGAAGGCGTTGGTTGAATTAGTGTTGAAATTGTAAAGAGTAAAAAGGGGAAGG
CGTAGGCCATGTCTTGAGGAGTATGGGGAAGACTCTCCCAAATTCTCCGGGAATTGAAGCCTGAATCTGTAAACCCAGATCCTCTTTCTTCTCAGCAATGCCTCAACATT
ACATGTGCTCTCTTTTCAATCATCTACTCTTCTAAACTCTGCAACACTCACATGCACATCTATACACTCTCAACCTTATTTTTAGCTATGGATTACCCTATTTAACTCTC
TTCTCGGTATCGCTGCGAGCTTATTTATTCCGGACTATAAGTTTGTTAATCGTAGATTACCATATTGGTACTCGTGAGGACGTTGGGCCTCCAAGAGAGGTTGATTGTAA
GATCCCACGTCGGTTGGAGA
Protein sequenceShow/hide protein sequence
MSLINLSYCSVTDVGLLSLASINCLRNMTILHLAGLTPDGLTAALLVCGGLRKVKLHLAAAGSPATRFSLAARTPKRQSRPSPGARCERFDSTRGPQQRATCVLM