; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03592 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03592
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
Genome locationCarg_Chr14:1802427..1806017
RNA-Seq ExpressionCarg03592
SyntenyCarg03592
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596659.1 Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8582.41Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR RRYRE+SYSRSPYDSR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS---CYSRSYS
        RSRS S    YSRSYS
Subjt:  RSRSHS---CYSRSYS

KAG7017535.1 Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-129100Show/hide
Query:  MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYY
        MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYY
Subjt:  MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYY

Query:  SGEPRGFRFVQFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG
        SGEPRGFRFVQFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG
Subjt:  SGEPRGFRFVQFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRG

Query:  RRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS
        RRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS
Subjt:  RRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS

XP_022151394.1 serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]1.7e-8584.21Show/hide
Query:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDG
        MRGR  SYSPSPPRSYGRR+RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSGEPRGF FVQFVDPA   DAKYE DG
Subjt:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDG

Query:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSR
        QVLLGRELTVVFAEENRKRPE MRARDSSRG SY+Y+RSPLRYS+SPHY RK +RS EYYSPA+  RYSRS+SPR RRYRE+SY RSPYDSRG SYSRSR
Subjt:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSR

Query:  SHSCYSRSY
        S S YSRSY
Subjt:  SHSCYSRSY

XP_022948463.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata]1.2e-8381.78Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS-CYSRSYS
        RSRS S  YSRSYS
Subjt:  RSRSHS-CYSRSYS

XP_023539101.1 serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo]1.1e-8482.71Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR RRYRE SYSRSPYDSR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS-CYSRSYS
        RSRS S  YS SYS
Subjt:  RSRSHS-CYSRSYS

TrEMBL top hitse value%identityAlignment
A0A1S3B7U0 serine/arginine-rich SC35-like splicing factor SCL332.3e-8384.43Show/hide
Query:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFV---DPADAKYEWDG
        MRGR  SYSPSPPRSYGRR RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSGEPRGF FVQFV   D ADAKYE DG
Subjt:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFV---DPADAKYEWDG

Query:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKR--SPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSR
        QVLLG ELTVVFAEENRKRPE MRARDSSRG SYSY R  SPLRYS+SPHY RK +RS EYYSPAR RRYSR  SPRGRRYREQSYSRSPYD RG SYSR
Subjt:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKR--SPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSR

Query:  SRSHSCYSRSYS
        SRS S YSRSYS
Subjt:  SRSHSCYSRSYS

A0A6J1DCY5 serine/arginine-rich SC35-like splicing factor SCL338.3e-8684.21Show/hide
Query:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDG
        MRGR  SYSPSPPRSYGRR+RSPSPR RGGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSGEPRGF FVQFVDPA   DAKYE DG
Subjt:  MRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPA---DAKYEWDG

Query:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSR
        QVLLGRELTVVFAEENRKRPE MRARDSSRG SY+Y+RSPLRYS+SPHY RK +RS EYYSPA+  RYSRS+SPR RRYRE+SY RSPYDSRG SYSRSR
Subjt:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSR

Query:  SHSCYSRSY
        S S YSRSY
Subjt:  SHSCYSRSY

A0A6J1G9D2 serine/arginine-rich SC35-like splicing factor SCL33 isoform X25.9e-8481.78Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS-CYSRSYS
        RSRS S  YSRSYS
Subjt:  RSRSHS-CYSRSYS

A0A6J1G9Y3 serine/arginine-rich SC35-like splicing factor SCL33 isoform X15.9e-8481.78Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFGRFGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSS G SYSY+RSPL+YSQSP +GRK + S EYYSPAR  RYSRS+SPR RRYRE+SYSRSPYDSR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS-CYSRSYS
        RSRS S  YSRSYS
Subjt:  RSRSHS-CYSRSYS

A0A6J1L0E4 serine/arginine-rich SC35-like splicing factor SCL33 isoform X23.0e-8380.09Show/hide
Query:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE
        KLKMRGR  SYSPSPPRSYGRRNRS SPRG GGR R L TSLLVRNLRHDCRPED+ GLFG+FGPLKDIYLPRDYYSG+PRGF FVQ++DP   ADAKYE
Subjt:  KLKMRGR--SYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYE

Query:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS
         DGQVLLGRELTVVFAEENRKRPE MRARDSSRG SYSY+RSPL+YSQSP +GRK +RS EYYSPAR RRYSRS+SPR + +RE+SYSRSPY+SR   YS
Subjt:  WDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYS

Query:  RSRSHS---CYSRSYS
        RSRS S    YSRSYS
Subjt:  RSRSHS---CYSRSYS

SwissProt top hitse value%identityAlignment
O75494 Serine/arginine-rich splicing factor 105.8e-2039.46Show/hide
Query:  SRYL---HTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAK---YEWDGQVLLGRELTVVFAEENRKRPEVMRARDS
        SRYL   +TSL VRN+  D R ED+   FGR+GP+ D+Y+P D+Y+  PRGF +VQF D  DA+   +  D + + GR++ + FA+ +RK P  M+A++ 
Subjt:  SRYL---HTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPADAK---YEWDGQVLLGRELTVVFAEENRKRPEVMRARDS

Query:  SRGWSYSYKRSPLRY--SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYS-RSPYDSRGCSYSRSRSHSCYSRSYS
           +S S      RY  S+S  Y R+ +RS  +    R     R+  P GR  R +S+S    +  R  S+SRS+S+S  SRS S
Subjt:  SRGWSYSYKRSPLRY--SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYS-RSPYDSRGCSYSRSRSHSCYSRSYS

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL283.2e-2642.68Show/hide
Query:  KLKMRGRSYSPSPPRSYGRRNRSPSPRGRGG----------RSRYLHTS----LLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF
        + + R RSYSP P      R+RSP PR R G           SR   +S    LL+RNL  D RP D+   F RFGPLKDIYLPR+YY+GEPRGF FV++
Subjt:  KLKMRGRSYSPSPPRSYGRRNRSPSPRGRGG----------RSRYLHTS----LLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQF

Query:  ---VDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYK----RSPLR----YSQSPHYGRKNARSA-----EYYSP-ARCRRYSRS
            D A+A    + +V+ GRE+ +VFAEENRK P+ MR  + + G    YK    RSP R    +S+S    R+ +R +     + YSP  R R  SRS
Subjt:  ---VDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYK----RSPLR----YSQSPHYGRKNARSA-----EYYSP-ARCRRYSRS

Query:  MSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS
          PR  R  +    RSP + R  +  RSR   C SRS S
Subjt:  MSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL303.4e-2842.79Show/hide
Query:  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD-
        R YSP   SPP R YG R RSP P           G GGR    H SLLVRN+  DCRPE++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D 
Subjt:  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD-

Query:  --AKYEWDGQVLLGRELTVVFAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY
          A+   + +   GRE+TVV A E+RKRPE MR            +RD S G S S   S  R  + P   R   RS   YSPA  RR           Y
Subjt:  --AKYEWDGQVLLGRELTVVFAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY

Query:  REQSYSRSPYDSRGCSYSRSRS
          +SYS     +   +  R R+
Subjt:  REQSYSRSPYDSRGCSYSRSRS

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A8.1e-5461.21Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDG
        MRGRSY+PSPPR YGRR RSPSPRGR  G R   L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK++ DG
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDG

Query:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYDS--
         +LLGRELTVVFAEENRK+P  MR RD   G S  +   +RSP RYS+S  P  GR++ +RS  Y SP   R  SRS+SP+ RRY +E+SYSRSP  +  
Subjt:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYDS--

Query:  --RGCSYSRSRSHS
          R  S  R +SHS
Subjt:  --RGCSYSRSRSHS

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL331.0e-5662.38Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ
        MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG 
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ

Query:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG
        +LLGRELTVVFAEENRK+P  MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR  RY   +SYSRSP    SRG
Subjt:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG

Query:  CSYSRSRSHS
         S +  R  S
Subjt:  CSYSRSRSHS

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 337.2e-5862.38Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ
        MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG 
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ

Query:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG
        +LLGRELTVVFAEENRK+P  MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR  RY   +SYSRSP    SRG
Subjt:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG

Query:  CSYSRSRSHS
         S +  R  S
Subjt:  CSYSRSRSHS

AT1G55310.2 SC35-like splicing factor 337.2e-5862.38Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ
        MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF FVQF+DP   ADAK+  DG 
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDP---ADAKYEWDGQ

Query:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG
        +LLGRELTVVFAEENRK+P  MRAR+   G     +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR  RY   +SYSRSP    SRG
Subjt:  VLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYD--SRG

Query:  CSYSRSRSHS
         S +  R  S
Subjt:  CSYSRSRSHS

AT1G55310.3 SC35-like splicing factor 331.7e-5458.74Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSG------------EPRGFRFVQFVDP-
        MRGRSY+PSPPR YGRR RSPSPRGR GGRSR L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G            +PRGF FVQF+DP 
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR-GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSG------------EPRGFRFVQFVDP-

Query:  --ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSY-SYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQ
          ADAK+  DG +LLGRELTVVFAEENRK+P  MRAR+   G  +   +R+P RY     S  P  GR  +RS +YYSP   R + RS+SPR  RY   +
Subjt:  --ADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSY-SYKRSPLRY-----SQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY-REQ

Query:  SYSRSPYD--SRGCSYSRSRSHS
        SYSRSP    SRG S +  R  S
Subjt:  SYSRSPYD--SRGCSYSRSRSHS

AT3G13570.1 SC35-like splicing factor 30A5.7e-5561.21Show/hide
Query:  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDG
        MRGRSY+PSPPR YGRR RSPSPRGR  G R   L TSLLVRNLRHDCR ED+   F +FGP+KDIYLPRDYY+G+PRGF F+QF+DPAD   AK++ DG
Subjt:  MRGRSYSPSPPRSYGRRNRSPSPRGR--GGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD---AKYEWDG

Query:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYDS--
         +LLGRELTVVFAEENRK+P  MR RD   G S  +   +RSP RYS+S  P  GR++ +RS  Y SP   R  SRS+SP+ RRY +E+SYSRSP  +  
Subjt:  QVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSY---KRSPLRYSQS--PHYGRKN-ARSAEYYSPARCRRYSRSMSPRGRRY-REQSYSRSPYDS--

Query:  --RGCSYSRSRSHS
          R  S  R +SHS
Subjt:  --RGCSYSRSRSHS

AT3G55460.1 SC35-like splicing factor 302.4e-2942.79Show/hide
Query:  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD-
        R YSP   SPP R YG R RSP P           G GGR    H SLLVRN+  DCRPE++   F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  D 
Subjt:  RSYSP---SPP-RSYGRRNRSPSP----------RGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFVQFVDPAD-

Query:  --AKYEWDGQVLLGRELTVVFAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY
          A+   + +   GRE+TVV A E+RKRPE MR            +RD S G S S   S  R  + P   R   RS   YSPA  RR           Y
Subjt:  --AKYEWDGQVLLGRELTVVFAEENRKRPEVMR------------ARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRY

Query:  REQSYSRSPYDSRGCSYSRSRS
          +SYS     +   +  R R+
Subjt:  REQSYSRSPYDSRGCSYSRSRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCC
ATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACG
ACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTC
CAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGAT
GAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATT
ATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTAT
AGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT
mRNA sequenceShow/hide mRNA sequence
ATGATCGTAAAACATTCCCCACAAAGAATCGATAGACCCGCGAAGCATAAAATCAAAGCCGGGAGAAATTTCTCAACGAAATTGAAAATGAGAGGTAGAAGTTATAGTCC
ATCACCACCAAGGAGTTATGGCAGGAGAAATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGTAGGTATCTGCATACAAGTCTTTTGGTTAGGAACCTAAGGCACG
ACTGCAGGCCAGAGGACGTACATGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCACGTGGCTTTAGATTTGTC
CAGTTTGTTGATCCTGCTGATGCCAAGTATGAATGGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCTGAAGTGAT
GAGAGCAAGAGACTCATCGAGGGGTTGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTATGGTCGAAAAAATGCACGTAGTGCAGAGTATT
ATTCCCCTGCTCGGTGTAGACGATACTCAAGGTCAATGTCGCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTGCAGTTAT
AGCCGGAGCAGGAGTCATAGCTGCTATAGCCGAAGCTATTCT
Protein sequenceShow/hide protein sequence
MIVKHSPQRIDRPAKHKIKAGRNFSTKLKMRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGPLKDIYLPRDYYSGEPRGFRFV
QFVDPADAKYEWDGQVLLGRELTVVFAEENRKRPEVMRARDSSRGWSYSYKRSPLRYSQSPHYGRKNARSAEYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSY
SRSRSHSCYSRSYS