; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03665 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03665
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationCarg_Chr14:1385561..1386837
RNA-Seq ExpressionCarg03665
SyntenyCarg03665
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580705.1 ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5199.06Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

KAG7017463.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-52100Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_022935108.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]2.1e-5199.06Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]8.1e-5197.17Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.1e-5097.17Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPF+LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B5.7e-5095.28Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

A0A6J1F9M2 replication protein A 14 kDa subunit B-like1.0e-5199.06Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1FQS1 replication protein A 14 kDa subunit B-like4.8e-4993.4Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

A0A6J1J6J3 replication protein A 14 kDa subunit B-like3.9e-5197.17Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1L034 replication protein A 14 kDa subunit B-like4.8e-4993.4Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B7.9e-3362.26Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FV+  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV

Q9LXK1 Replication protein A 14 kDa subunit A9.7e-3158.88Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FV+  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

Q9SDK9 Replication protein A 14 kDa subunit1.3e-2751.89Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS P+ FV+ E+L+++VGRRVR V+Q Q E  G++ G+STD  Q+T+KG+    +S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
         K LF+
Subjt:  FKPLFV

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein6.9e-3258.88Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FV+  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein6.9e-3258.88Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FV+  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein5.6e-3462.26Show/hide
Query:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FV+  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTGAGTGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCAT
ATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATAC
GAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCAGTTTTTGTGAGTGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCAT
ATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATAC
GAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGC
CAGACATTCATTGGCCGGAAAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCA
TACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATC
TATTTTAATCGATTTTGTTTTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCT
GGGTAGAATTTTGTTGACATTTTAATCATGTTTGTTTATAATTTAGATGAGTGATCTCGAACTGATACAAACTCTAATGTTTTAGGTGAAGCTTAAAATGTTCTGACA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV