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Carg03802 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03802
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationCarg_Chr08:107588..108923
RNA-Seq ExpressionCarg03802
SyntenyCarg03802
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592829.1 hypothetical protein SDJN03_12305, partial [Cucurbita argyrosperma subsp. sororia]5.3e-36100Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVN
        MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVN
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVN

KAG7025237.1 hypothetical protein SDJN02_11732 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-60100Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
        MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP

Query:  DTVINSADKFINKSILRKVAHIQDNTKTV
        DTVINSADKFINKSILRKVAHIQDNTKTV
Subjt:  DTVINSADKFINKSILRKVAHIQDNTKTV

XP_022960397.1 uncharacterized protein LOC111461134 [Cucurbita moschata]1.6e-5395.9Show/hide
Query:  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINS
        + SAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESI EVEEPDTVINS
Subjt:  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINS

Query:  ADKFINKSILRKVAHIQDNTKT
        ADKFINKSILRKVAHIQDNTKT
Subjt:  ADKFINKSILRKVAHIQDNTKT

XP_023004241.1 uncharacterized protein LOC111497635 [Cucurbita maxima]1.1e-5796.12Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
        MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S G PSRS YMKGEYAPVYIVLGFVGIVL+MGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP

Query:  DTVINSADKFINKSILRKVAHIQDNTKTV
        DTVINSADKFINKSILRKVAHIQDNTKTV
Subjt:  DTVINSADKFINKSILRKVAHIQDNTKTV

XP_023513989.1 uncharacterized protein LOC111778418 [Cucurbita pepo subsp. pepo]2.6e-5998.45Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
        MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP

Query:  DTVINSADKFINKSILRKVAHIQDNTKTV
        DTVINSADKFINKSILRKVAHIQDNTKTV
Subjt:  DTVINSADKFINKSILRKVAHIQDNTKTV

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein1.1e-3465.69Show/hide
Query:  FRPSLTS-AWKSML---RTQGKRRLASSST---ASTIENA---ATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRE
        FR SL +  WKSML   R QG RR +SS+T   A+ I+NA   +++S G    SEYMKGEYAP+YIV+G V +V+ + THTAKQQLLHSP+VN SKKKRE
Subjt:  FRPSLTS-AWKSML---RTQGKRRLASSST---ASTIENA---ATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRE

Query:  SIPEVEEPDTVINSADKFINKSILRKVAHIQDNTKTV
        SIPEVE+PDTVI SADKFINKS LRKVAHIQ +TKT+
Subjt:  SIPEVEEPDTVINSADKFINKSILRKVAHIQDNTKTV

A0A1S3CBE5 uncharacterized protein LOC1034988992.2e-3566.42Show/hide
Query:  FRPSLTS-AWKSML---RTQGKRRLASSST---ASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIP
        FR SL +  WKSML   R QG RR ASS+T   A+   +++++S G    SEYMKGEYAP+YIV+G V +V+ + THTAKQQLLHSP+VN SKKKRESIP
Subjt:  FRPSLTS-AWKSML---RTQGKRRLASSST---ASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIP

Query:  EVEEPDTVINSADKFINKSILRKVAHIQDNTKTV
        EVE+PDTVI SADKFINKS LRKVAHIQD+TKT+
Subjt:  EVEEPDTVINSADKFINKSILRKVAHIQDNTKTV

A0A6J1D5L1 uncharacterized protein LOC111017496 isoform X21.2e-3364.93Show/hide
Query:  MAFRPSLTSAWKSML-----RTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIP
        MAFR +L   WKSML     R +GKR  ASS+TA         S+ S S+SEYMKGEYAP+YIV+G V + + +GTHTAKQQLLHSPVV +SKKKRESIP
Subjt:  MAFRPSLTSAWKSML-----RTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIP

Query:  EVEEPDTVINSADKFINKSILRKVAHIQDNTKTV
        EV++PDTVI SADKF+NKS LRKVAHIQD+ KT+
Subjt:  EVEEPDTVINSADKFINKSILRKVAHIQDNTKTV

A0A6J1H7A1 uncharacterized protein LOC1114611347.9e-5495.9Show/hide
Query:  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINS
        + SAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESI EVEEPDTVINS
Subjt:  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINS

Query:  ADKFINKSILRKVAHIQDNTKT
        ADKFINKSILRKVAHIQDNTKT
Subjt:  ADKFINKSILRKVAHIQDNTKT

A0A6J1KRK6 uncharacterized protein LOC1114976355.3e-5896.12Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
        MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S G PSRS YMKGEYAPVYIVLGFVGIVL+MGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP

Query:  DTVINSADKFINKSILRKVAHIQDNTKTV
        DTVINSADKFINKSILRKVAHIQDNTKTV
Subjt:  DTVINSADKFINKSILRKVAHIQDNTKTV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein5.3e-1841.09Show/hide
Query:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP
        MAFR +      S LR  G +   S   A+T+ + A  +    S    + GE+APV I+ GFVG+ ++M  H+ KQQL+H+P ++  K +R ++ EV++P
Subjt:  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEP

Query:  DTVINSADKFINKSILRKVAHIQDNTKTV
        +  ++SADKFINKS LRKV  IQD +K +
Subjt:  DTVINSADKFINKSILRKVAHIQDNTKTV

AT5G07330.1 unknown protein4.2e-1539.62Show/hide
Query:  RLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINSADKFINKSILRKVAH
        R  + STA+T      T+T + +     KG++ PVY+ +G + + +  G +TA   L  +P V V+KK RE++PE+E+PD V+N AD+F N+S  RK+AH
Subjt:  RLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINSADKFINKSILRKVAH

Query:  IQDNTK
        +Q+  K
Subjt:  IQDNTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCAGACCCTCTCTCACCTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAGCGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTAC
GACTTCTACGGGCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGGTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGG
CGAAGCAGCAGCTGCTGCATTCCCCGGTGGTCAATGTGAGCAAGAAGAAGAGGGAGAGCATCCCGGAGGTGGAGGAGCCCGACACCGTCATCAATTCCGCCGACAAGTTT
ATCAACAAATCCATTCTTAGGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAG
mRNA sequenceShow/hide mRNA sequence
GACAAAAAGAAATCTTAAAAGAAAAAAAAATATATATATCGAACATTGAAAAGAAGTACCTAAGAAATAACCTATGTTGGACTAAAATAATAATTTAACCAAAAACAGAA
AAACAAAGAACTTAGGGACGGCATTACATTGAAATTTATGAAGAAAAAAAAACTCCGGACCTTTATGCTGTTATGTGGACGAAAACGTGCGGTAGCTATAAATTAGAATG
AGGGCGGAATATGAGGCGAACAGTTGGTGTGTGAAAACCAGAAGTCCTAAAATGTGTGCATGGAGGAGGTAACGTGTCCGGCCAAGGCGCATCAGGAGTTGGTATTCCCT
GTTGTACGTCCTCCACATGGCCTTCTATAAACTTGGTCAACAACTAACCCTTTTAAACACGAGTTCAATCCGATCCCCATCTGCTCACGACCCAAAGAAATGGCTTTCAG
ACCCTCTCTCACCTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAGCGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTACGACTTCTACGG
GCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGGTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGGCGAAGCAGCAG
CTGCTGCATTCCCCGGTGGTCAATGTGAGCAAGAAGAAGAGGGAGAGCATCCCGGAGGTGGAGGAGCCCGACACCGTCATCAATTCCGCCGACAAGTTTATCAACAAATC
CATTCTTAGGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAGTACGGGATCCCTTTTACCAGCTCACTTCAAGTTTACAATATTTATGTTGTTTAGTATAGTA
TGCCCTTTGGTTTCAGGCCCCCTAATGCTGACACTCCAAAACTGCTGGAGTGGGTGGATCCTGCCCGGCGTTGAACAACCCCTTGTGTGTAAGCATTTGAATGTCTTCAT
TTCTCTACTTCTGATTCCCACCAATGTGTGTGTGTGTGTGTGTATATAATGGGCCCTTCTGGTTCTGGATCTCTTCCCTTTGTGGTGTTGGATGGAGCAGACTAGGTCTA
GGCATGAGGCCCTCGGTTCTGTTTTTTTTTTTTTTTCATGTAAAATAAAACCAA
Protein sequenceShow/hide protein sequence
MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINSADKF
INKSILRKVAHIQDNTKTV