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Carg03803 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03803
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S27
Genome locationCarg_Chr08:105562..106203
RNA-Seq ExpressionCarg03803
SyntenyCarg03803
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025236.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-27100Show/hide
Query:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
Subjt:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

TQD77936.1 hypothetical protein C1H46_036469 [Malus baccata]2.3e-2181.97Show/hide
Query:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M++   C    QDVKCQGCF+ITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRK
Subjt:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

WP_214429920.1 hypothetical protein, partial [Escherichia coli]5.0e-2189.29Show/hide
Query:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        S D +  DVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRK
Subjt:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

XP_006348533.1 PREDICTED: 40S ribosomal protein S27-2 isoform X1 [Solanum tuberosum]5.0e-2189.29Show/hide
Query:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        S D +  DVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRK
Subjt:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

XP_022960233.1 40S ribosomal protein S27-2-like [Cucurbita moschata]8.6e-2194.23Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

TrEMBL top hitse value%identityAlignment
A0A2H5QKC8 40S ribosomal protein S274.2e-2194.23Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

A0A540KUR0 40S ribosomal protein S271.1e-2181.97Show/hide
Query:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M++   C    QDVKCQGCF+ITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRK
Subjt:  MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

A0A6J1KPW3 40S ribosomal protein S274.2e-2194.23Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q2VCJ1 40S ribosomal protein S272.4e-2189.29Show/hide
Query:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        S D +  DVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRARLTEGCSFRRK
Subjt:  SCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

V4W2J8 40S ribosomal protein S274.2e-2194.23Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-16.8e-2180.77Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

O74330 40S ribosomal protein S273.4e-2080.77Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q8L953 40S ribosomal protein S27-36.2e-2286.54Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S272.3e-2186.54Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q9M2F1 40S ribosomal protein S27-21.6e-2286.54Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein4.9e-2280.77Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S271.2e-2386.54Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRK
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

AT3G61111.1 Zinc-binding ribosomal protein family protein4.2e-1872.55Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRR
        Y   V+C  C NITT+FSHSQTVVVCG CQ+VLCQPTGG+A+LT GCSFR+
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRR

AT5G47930.1 Zinc-binding ribosomal protein family protein4.4e-2386.54Show/hide
Query:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        +  DVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  YMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATCGAGCTGTCTTGTGATTTATATATGCAGGATGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAA
TTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAG
mRNA sequenceShow/hide mRNA sequence
TTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTTCTTCAAAACGA
TATTGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAACATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTTTGCTCTTTCGTTTAAATTC
TTTTTGCTCTCTTTGATCTAATCTTTTCTCCGATAATGGTGATCGAGCTGTCTTGTGATTTATATATGCAGGATGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTA
TTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAG
Protein sequenceShow/hide protein sequence
MVIELSCDLYMQDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK