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Carg03814 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03814
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLITAF domain-containing protein
Genome locationCarg_Chr08:47169..48857
RNA-Seq ExpressionCarg03814
SyntenyCarg03814
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006629 - LPS-induced tumour necrosis factor alpha factor
IPR037519 - LITAF domain containing protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025225.1 GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma]1.6e-66100Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

XP_022960171.1 GSH-induced LITAF domain protein-like [Cucurbita moschata]6.5e-6597.5Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK 
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

XP_023004350.1 GSH-induced LITAF domain protein-like [Cucurbita maxima]1.1e-5988.8Show/hide
Query:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVG
        MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVG
Subjt:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVG

Query:  DFEKFDKCAVMDPSNWTQQSFALPA
        DFEK DKCAVMDPSNWTQQS ALPA
Subjt:  DFEKFDKCAVMDPSNWTQQSFALPA

XP_023514783.1 GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo]1.7e-6597.5Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEKF
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]4.9e-5274.63Show/hide
Query:  MSEDDKPV--------------GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHY
        MS++D+PV              G+   NAIF DPQGVPIQQTM+RDTPAPFYCVYCG SGLT VRSK+SSAAVVGCMTP +LGVCFL PS+DCLWHKYHY
Subjt:  MSEDDKPV--------------GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHY

Query:  CPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA
        CPSCKEKVGDFEK D+CAVMDP NWTQ SFALPA
Subjt:  CPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA

TrEMBL top hitse value%identityAlignment
A0A0A0KDG7 LITAF domain-containing protein1.5e-5182.88Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP
        G+  PNAIF DP GVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+SSAAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A1S3CCH3 uncharacterized protein LOC1034988817.6e-5181.98Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP
        G+  PN IF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein2.0e-5182.88Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP
        G+  PNAIF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A6J1H6W0 GSH-induced LITAF domain protein-like3.2e-6597.5Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK 
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKF

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

A0A6J1KUC0 GSH-induced LITAF domain protein-like5.2e-6088.8Show/hide
Query:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVG
        MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVG
Subjt:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVG

Query:  DFEKFDKCAVMDPSNWTQQSFALPA
        DFEK DKCAVMDPSNWTQQS ALPA
Subjt:  DFEKFDKCAVMDPSNWTQQSFALPA

SwissProt top hitse value%identityAlignment
Q94CD4 GSH-induced LITAF domain protein1.1e-4166.96Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP
        G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM P MLG CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP

Query:  SNWTQQSFALPA
          W Q SFALPA
Subjt:  SNWTQQSFALPA

Arabidopsis top hitse value%identityAlignment
AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).7.5e-4366.96Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP
        G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM P MLG CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDP

Query:  SNWTQQSFALPA
          W Q SFALPA
Subjt:  SNWTQQSFALPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTT
CTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTT
GTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAAC
TGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
TCTTTCCCTTCCATCGTAATCCTCCCCTACCGCCGTTTTTCGTTTTCCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAATATGTCCGAGGACGACAAGCC
GGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAA
TTTCCGGTCTCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTT
TGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGC
GTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTGCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACA
CTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATATGTACACTCGTGATAGAACCAAGTACATATTTTTATCCATTCACCTTACAAGTCATTTCATACACC
Protein sequenceShow/hide protein sequence
MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN
WTQQSFALPA