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Carg03839 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03839
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRegulator of chromosome condensation (RCC1) family protein
Genome locationCarg_Chr12:1550148..1550792
RNA-Seq ExpressionCarg03839
SyntenyCarg03839
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000408 - Regulator of chromosome condensation, RCC1
IPR009091 - Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585384.1 Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia]7.8e-39100Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

KAG7020301.1 Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-39100Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALAG
        MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALAG
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALAG

XP_022951960.1 ultraviolet-B receptor UVR8 [Cucurbita moschata]2.3e-3898.86Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRG+FGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

XP_023002287.1 ultraviolet-B receptor UVR8 [Cucurbita maxima]7.3e-3794.32Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTGTRP SGK+SAKVVAIAAGEAHTL LTGDGRVYSWGRGMFGRLGTGTEADE+LPVRVKLGSEE NLKVVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

XP_023537385.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo]6.2e-3693.18Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTG R SSGK+SAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADE+LPVRVKLGSEE NL+VVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

TrEMBL top hitse value%identityAlignment
A0A0A0LPS2 Uncharacterized protein6.5e-3185.06Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL
        ME+S  GTRPSSGK+S KVVAI+AGEAHTL LTGDGRVYSWGRGMFGRLGTG E+DE+ PVRVKLGS E NLKVVAIAAGSYHSLAL
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL

A0A5A7VA41 Ultraviolet-B receptor UVR8 isoform X21.4e-3085.54Show/hide
Query:  TGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        +GTRPSS K+S KVV IAAGEAHT+ LTGDGRVYSWGRGMFGRLGTG E+DE+ PVRVKLGSEE NLKVVAIAAGSYHSLALA
Subjt:  TGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

A0A6J1BUJ5 ultraviolet-B receptor UVR81.4e-3085.54Show/hide
Query:  TGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        +GTRPS+G +S KVVAIAAGEAHTLALTGDG +YSWGRGMFGRLGTGTEADE+ PVRVKLGSEE NLK+V IAAGSYHSLALA
Subjt:  TGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

A0A6J1GKD3 ultraviolet-B receptor UVR81.1e-3898.86Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRG+FGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

A0A6J1KQ12 ultraviolet-B receptor UVR83.5e-3794.32Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        MEDSGTGTRP SGK+SAKVVAIAAGEAHTL LTGDGRVYSWGRGMFGRLGTGTEADE+LPVRVKLGSEE NLKVVAIAAGSYHSLALA
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

SwissProt top hitse value%identityAlignment
O95714 E3 ubiquitin-protein ligase HERC23.3e-0843.59Show/hide
Query:  SGKVSAK-VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        SGK + K VV IA G  ++ A+T +G +Y+WGRG +GRLG G+  DE +P+ V   +    LKV+ +A GS  +  LA
Subjt:  SGKVSAK-VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

Q4U2R1 E3 ubiquitin-protein ligase HERC23.3e-0843.59Show/hide
Query:  SGKVSAK-VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        SGK + K VV IA G  ++ A+T +G +Y+WGRG +GRLG G+  DE +P+ V   +    LKV+ +A GS  +  LA
Subjt:  SGKVSAK-VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

Q5GLZ8 Probable E3 ubiquitin-protein ligase HERC41.6e-0745.07Show/hide
Query:  VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLG-TGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        +VA++ GEAHTLAL   G+VY+WG    G+LG  G+E    +P  +K  S+   +++V +A G YHSLAL+
Subjt:  VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLG-TGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

Q6PAV2 Probable E3 ubiquitin-protein ligase HERC49.7e-0846.48Show/hide
Query:  VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLG-TGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        +VA+A GEAHTLAL   G+VY+WG    G+LG  G+E    +P  +K  S+   +++V +A G YHSLAL+
Subjt:  VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLG-TGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

Q9FN03 Ultraviolet-B receptor UVR87.4e-0840.91Show/hide
Query:  IAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL
        I+ G  HT+ALT DG++Y WG   FG++G G   D+  PV+V+   ++   KVV ++ G  H+LA+
Subjt:  IAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL

Arabidopsis top hitse value%identityAlignment
AT3G02510.1 Regulator of chromosome condensation (RCC1) family protein1.5e-0841.3Show/hide
Query:  GTG-TRPSSGKVSAK------VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTG--TEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL
        GTG T+P+S  V  +      +V IAAG  H+ ALT  G VY WGRG  GRLG G   ++ +++P +V L +EE    ++ ++ G  HS+AL
Subjt:  GTG-TRPSSGKVSAK------VVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTG--TEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL

AT3G53830.1 Regulator of chromosome condensation (RCC1) family protein1.5e-0841.1Show/hide
Query:  SAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA
        S ++ ++AAG  HT+ ++ DG+VY++G   FG+LGTGT+  EILP R+  G         A++ G+ HS  LA
Subjt:  SAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALA

AT5G11580.1 Regulator of chromosome condensation (RCC1) family protein4.6e-2156.67Show/hide
Query:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKL--GSEEVNLKVVAIAAGSYHSLALA
        MED  + T   S  +S K++++AAGEAHT+ALTGDG VYSWGRGMFGRLGTG E+DE++PV V+    +E   +++V +AAG+YHSLA++
Subjt:  MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKL--GSEEVNLKVVAIAAGSYHSLALA

AT5G16040.1 Regulator of chromosome condensation (RCC1) family protein2.6e-0841.25Show/hide
Query:  PSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTG--TEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL
        P  G     +V IAAG  H+ ALT +G VY WGRG  GRLG G   ++ ++LP +V L + E    ++ ++ G  HS+AL
Subjt:  PSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTG--TEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL

AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein5.3e-0940.91Show/hide
Query:  IAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL
        I+ G  HT+ALT DG++Y WG   FG++G G   D+  PV+V+   ++   KVV ++ G  H+LA+
Subjt:  IAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGAGATGGGAG
AGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAG
TTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGGTTAG
mRNA sequenceShow/hide mRNA sequence
TTTCTAAATGATTGAATAGTAAGCGATAGCCTTGTTTCTGGACATATCCTCGCCGTTTCCTTCTTCAATCAATTTGTGGAGTTCAATAATTAATTGAAGGAAGATTCAAT
GGAGTTGCAGAAGTGAATTTGAGCTATAGTAATCAGTGTTTTCGATCTTAGCCAAAGGCACAGCAGCTTTCATCAATCTCACACTGACAAATTTGATCCGTTGCGCACTC
CTAAGTCTGAATTCCTACTGTTTCCCTGCTTTCGTGGCCGAAGTTTTGTGCTAGGATACGCAATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCG
GCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGAC
GGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGGTT
AG
Protein sequenceShow/hide protein sequence
MEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALAG