; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03846 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03846
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationCarg_Chr12:1606495..1609956
RNA-Seq ExpressionCarg03846
SyntenyCarg03846
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150286.1 exosome complex exonuclease RRP46 homolog [Cucumis sativus]5.1e-12593Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_022131722.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia]3.9e-12595.02Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]3.3e-132100Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]9.6e-13299.59Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQV GEPLENGIITSLT
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]3.7e-13199.18Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein2.5e-12593Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein1.2e-12492.59Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+ITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A6J1BU99 exosome complex exonuclease RRP46 homolog isoform X11.9e-12595.02Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK

A0A6J1GI69 exosome complex exonuclease RRP46 homolog1.6e-132100Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog4.7e-13299.59Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQV GEPLENGIITSLT
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

SwissProt top hitse value%identityAlignment
Q84T68 Exosome complex exonuclease RRP46 homolog1.8e-8063.87Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT +LAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+ +DG+LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S   +   Q   E  E G+ITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD
         G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD

Q9CRA8 Exosome complex component RRP461.4e-3235.62Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +A +     ++                 E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCL

Query:  ERGRAATAKMSAFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSAFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog8.3e-10273.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

Q9NQT4 Exosome complex component RRP461.6e-3336.53Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +A +                   A + +E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCL

Query:  ERGRAATAKMSAFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSAFLRRSLQ

Q9SP08 Exosome complex component RRP41 homolog5.9e-1529.94Show/hide
Query:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL
        R DGR  N++R +     V+++A GSA +  G+TK++AAVYGP+    K++  +     V+ +    Q    +R          E  +++++T+++  + 
Subjt:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL

Query:  TINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYV----ILDPTKLEEQKMKASV
         + P++   I +QV+  DG      INA+  AL DAGIP++ LAV+ S     +GY+    +LD   +E+    A V
Subjt:  TINPNTTTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYV----ILDPTKLEEQKMKASV

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein5.9e-10373.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein5.9e-10373.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein5.9e-10373.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein5.9e-10373.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein5.9e-10373.25Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT
        TTS+++QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIITS+T
Subjt:  TTSIVVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLT

Query:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
         G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGA
CACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTG
GAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGA
GAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTA
CCCAAGTTGCAGGCGAACCTCTGGAGAACGGAATAATAACATCTTTAACTCAAGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACA
GCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGCTGA
mRNA sequenceShow/hide mRNA sequence
TCTCTGATACTCGCTCACTCCATTCTCTTGACCAGCTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACC
GCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACC
TAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATAT
TGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCAATT
AATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAA
GCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAACG
GAATAATAACATCTTTAACTCAAGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGC
TTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGCTGATTGTATCCAAGTCCTTGCCTATGAATTGTTCTCCACGACATAATCTGGCTTGGGAAGGTATCGTCTGT
TGTATGATTTATTTTGATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGAGTTCTCAGTGGATTTGATTG
Protein sequenceShow/hide protein sequence
MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIH
DDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAAT
AKMSAFLRRSLQPQLPTDSSKVG