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Carg03912 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03912
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptiontRNA (Cytosine(38)-C(5))-methyltransferase
Genome locationCarg_Chr12:1991424..1992677
RNA-Seq ExpressionCarg03912
SyntenyCarg03912
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR001525 - C-5 cytosine methyltransferase
IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064954.1 tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 [Cucumis melo var. makuwa]8.9e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

KAG6585458.1 tRNA (cytosine(38)-C(5))-methyltransferase 2, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2988.89Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLG
        MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ++     +LG
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLG

KAG7020373.1 DNA (cytosine-5)-methyltransferase, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-49100Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLGQATVKTQRATESYKKEAELESKKRIMER
        MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLGQATVKTQRATESYKKEAELESKKRIMER
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLGQATVKTQRATESYKKEAELESKKRIMER

Query:  P
        P
Subjt:  P

XP_004138735.1 tRNA (cytosine(38)-C(5))-methyltransferase 2 isoform X2 [Cucumis sativus]8.9e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

XP_008445162.1 PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 [Cucumis melo]8.9e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

TrEMBL top hitse value%identityAlignment
A0A0A0LSE8 Uncharacterized protein4.3e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

A0A1S3BC07 tRNA (Cytosine(38)-C(5))-methyltransferase isoform X14.3e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

A0A5A7VCE7 tRNA (Cytosine(38)-C(5))-methyltransferase isoform X14.3e-2385.48Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK FPK QDE WRVLEF+SGIGG+RYSLLSAG+ AKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

A0A6J1BVV7 DNA (Cytosine-5)-methyltransferase isoform X18.1e-2283.87Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK  P+ Q E WRVLEF+SGIGG+RYSLLSAGVDAKVV+AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

A0A6J1K9S0 tRNA (Cytosine(38)-C(5))-methyltransferase1.8e-2180.65Show/hide
Query:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        MEK  PK Q E WRVLEF+SGIGG+RYSLL AG+DAKV++AFDINDKANDVYEHNFGDRP+Q
Subjt:  MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

SwissProt top hitse value%identityAlignment
F4JWT7 tRNA (cytosine(38)-C(5))-methyltransferase 21.2e-1466Show/hide
Query:  WRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        W+VLEF+SGIGG+RYSL+++G+ ++VV AF+IND ANDVY+HNF  RP+Q
Subjt:  WRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

O14717 tRNA (cytosine(38)-C(5))-methyltransferase3.5e-0647.37Show/hide
Query:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH-QLWSK
        E  RVLE +SG+GG+ ++L  + + A+VV A D+N  AN+VY++NF   PH QL +K
Subjt:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH-QLWSK

O55055 tRNA (cytosine(38)-C(5))-methyltransferase9.3e-0750.98Show/hide
Query:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH
        E  RVLE +SGIGG+ ++L  + + A VV A D+N  AN+VY+HNF   PH
Subjt:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH

Q4G073 tRNA (cytosine(38)-C(5))-methyltransferase2.7e-0650.98Show/hide
Query:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH
        E  RVLE +SGIGG+ ++L  + V A VV A D++  AN+VY+HNF   PH
Subjt:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPH

Q54JH6 DNA (cytosine-5)-methyltransferase1.1e-0750Show/hide
Query:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        E  RVLEF+SGIGG+ Y L  +GVD +V+++FDIN  AN  Y++ F +   Q
Subjt:  EHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ

Arabidopsis top hitse value%identityAlignment
AT5G25480.1 DNA methyltransferase-28.6e-1666Show/hide
Query:  WRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ
        W+VLEF+SGIGG+RYSL+++G+ ++VV AF+IND ANDVY+HNF  RP+Q
Subjt:  WRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGAGTCCTTGAATTCTTCAGCGGCATTGGTGGCATAAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAA
AGTAGTACGAGCTTTTGATATCAACGATAAAGCAAACGACGTTTACGAGCATAATTTCGGCGATCGTCCGCATCAGTTATGGTCAAAGCAATCCTACGTGCTTGGTCAAG
CTACTGTAAAGACTCAGAGAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTCGAGTCTAAAAAACGAATCATGGAGAGACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGGCATTTCCAAAGCAGCAAGACGAACATTGGAGAGTCCTTGAATTCTTCAGCGGCATTGGTGGCATAAGATACTCTCTACTGAGTGCTGGCGTCGATGCGAA
AGTAGTACGAGCTTTTGATATCAACGATAAAGCAAACGACGTTTACGAGCATAATTTCGGCGATCGTCCGCATCAGTTATGGTCAAAGCAATCCTACGTGCTTGGTCAAG
CTACTGTAAAGACTCAGAGAGCAACAGAGAGCTACAAGAAAGAGGCAGAACTCGAGTCTAAAAAACGAATCATGGAGAGACCTTGA
Protein sequenceShow/hide protein sequence
MEKAFPKQQDEHWRVLEFFSGIGGIRYSLLSAGVDAKVVRAFDINDKANDVYEHNFGDRPHQLWSKQSYVLGQATVKTQRATESYKKEAELESKKRIMERP