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Carg03932 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03932
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxin-responsive protein
Genome locationCarg_Chr12:2075624..2075979
RNA-Seq ExpressionCarg03932
SyntenyCarg03932
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0042221 - response to chemical (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR003311 - AUX/IAA protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585474.1 hypothetical protein SDJN03_18207, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5098.94Show/hide
Query:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKD+DDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
Subjt:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

KAG7020393.1 hypothetical protein SDJN02_17077, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-51100Show/hide
Query:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
Subjt:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

XP_004138851.1 auxin-responsive protein IAA29 [Cucumis sativus]8.3e-2361.22Show/hide
Query:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Subjt:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

XP_008445232.2 PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]8.3e-2359.18Show/hide
Query:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+ T  C  Q +DEEK   VGWPPI SWRKK     T PP
Subjt:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

XP_023537127.1 uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo]4.5e-4592.55Show/hide
Query:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLHHHPLHGAPTNCIKHP VTNELPN SPLLSWNDKPKDEDDPDRP++TRSCTFQI DEEKNH VGWPPIGSWRKKVLDQL HPP
Subjt:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

TrEMBL top hitse value%identityAlignment
A0A0A0LPM6 Auxin-responsive protein4.0e-2361.22Show/hide
Query:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Subjt:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

A0A1S3BCX7 Auxin-responsive protein4.0e-2359.18Show/hide
Query:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+ T  C  Q +DEEK   VGWPPI SWRKK     T PP
Subjt:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

A0A5A7VD13 Auxin-responsive protein4.0e-2359.18Show/hide
Query:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+ T  C  Q +DEEK   VGWPPI SWRKK     T PP
Subjt:  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

A0A6J1BRK7 Auxin-responsive protein1.0e-1045.45Show/hide
Query:  MELQLGLSLPLHHHPLHGAP-TNCIKHPHVTNELPNA--SPLLSWNDKPKDEDDPDRPRETRSCTF--QIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGL+LPLH   L   P       P  TN L +    PLLSWN  P DED+ + P  T   T   +  DE+KN  VGWPP+ SWR K      H P
Subjt:  MELQLGLSLPLHHHPLHGAP-TNCIKHPHVTNELPNA--SPLLSWNDKPKDEDDPDRPRETRSCTF--QIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

A0A6J1HG86 Auxin-responsive protein9.2e-2056.38Show/hide
Query:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP
        MELQLGLSLPLH++          +HP + NELP   PLLSWNDKPKD+D    P  T   T Q  DEEKN  VGWPPI +WRKK L Q   PP
Subjt:  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTC
GCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAG
TCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTC
GCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAG
TCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG
Protein sequenceShow/hide protein sequence
MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP