CuGenDBv2

Gene ID	Carg03946
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L39
Genome location	Carg_Chr12:2142747..2144076
RNA-Seq Expression	Carg03946
Synteny	Carg03946
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4358813.1 hypothetical protein G4B88_023097 [Cannabis sativa]

2.1e-22

78.38

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Query:  LKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L++ FLL+ R P    P+S  +KMPSHK+F IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-38

100

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Query:  MRISSFTLSLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MRISSFTLSLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MRISSFTLSLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-22

77.33

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Query:  SLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SL +GF ++           R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-22

98.21

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Query:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

2.8e-22

98.21

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Query:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

1.3e-22

100

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Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5AKY6 Ribosomal protein

2.3e-22

85.71

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Query:  PKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P  ++ + R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein

2.3e-22

85.71

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Query:  PKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P  ++ + R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

1.3e-22

98.21

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Query:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A7J6EK79 Uncharacterized protein

1.0e-22

78.38

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Query:  LKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L++ FLL+ R P    P+S  +KMPSHK+F IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

1.4e-21

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

2.9e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

2.9e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

8.4e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

2.9e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

8.9e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

3.3e-21

90.2

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

1.0e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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mRNA sequence

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ATGCGCATCTCCTCCTTTACCCTCTCTCTGAAATTAGGGTTTTTGCTCGTTGTTCGCTGTCCGAAGACCTCGCAGCCGGTTTCCCGAATCTCGAAGATGCCGTCTCACAA
GACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCGAA
GGCACTGGCGACGTACTAAGCTCGGATTTTGAGGTGTTTTGTTTGTGATTTGCTCTTCAATCCTTCGCAATTGTTTTGAAACCTATTTAAGCATTAGATACGGTGAAGAC
AAAGAATATAGAGCTAGATGTTTGAATTTTTGTCTCTCAATTAAGAACTTGTCGAAGAGAAACACCTGTAGCACTATTTAGCCTTCTATTTTAAATATATATCTGGAGTA
GTTTCAGTTCATATGTTAATCTCGTGTTCGTTTCGTTCATTACTATCCTATTTCAGTTTAGTTCCTTTTCTTCTAACATCGGTGGGAGTTTCATTTTTGTCTTGATCGTT
CAAGTATTCATATGAAGGAGTTTGGTATCCACACCAGGCTTTCCATTACATACTGTTTCTTGATTCATTTATTAATTGGCTTGCTGTTTTATTTTACATATTTGAACAAA
TCCATCATCTACGTCATTGATGACATTTTTGTTCGAAGTATGTTGTAGTTTCTAAATCTTTTTCTATCTTATATGCTGGTTTAACTTTTGGTGATAGTTTAAAGTTCTTT
GATAACCATGCAAGTCTTGTTTGATGATCATTTTTATGTTTGGTTTTTGAAATTTGGCTAAGAATTCAAGAATCACATTTAAAGTTTATTTGGGAGCACATTCAATTTGA
CAATTGTTTGCCTATGATGTTCGTGACTTTCATGGGGAATTGTTTACAAATTGATCCTTGTTTCAAGCAAGTCTGTACTGATGAACTCATGGGCAGTTCCCCATGGTCTG
TCAAACATTCGTCTTCTCTCCTGAATCGCTAGTTTCTTGTTTTTTCTTAAGAATTATCATAATTTGACACAGGTCGTAAACTAATAAAAATACAAAAGTGGTCTATTTGC
AAAAACAATTTAAT

Protein sequence

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MRISSFTLSLKLGFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Carg03946 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome