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Carg03996 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03996
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGibberellin-regulated protein 2
Genome locationCarg_Chr12:2469632..2470324
RNA-Seq ExpressionCarg03996
SyntenyCarg03996
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022951559.1 snakin-2-like [Cucurbita moschata]7.7e-48100Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

XP_023002563.1 snakin-2-like [Cucurbita maxima]1.7e-4798.97Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHH+CPCYASLTTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

XP_023537913.1 snakin-2-like [Cucurbita pepo subsp. pepo]6.5e-4798.97Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSR RLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

XP_038886088.1 snakin-2-like isoform X1 [Benincasa hispida]5.5e-3880.81Show/hide
Query:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        M+  SKALIASL LSLLFLHS  VES G  ++ PSPQKMDCGGACA RCRLSSR RLC+RACGTCC+RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

XP_038886089.1 snakin-2-like isoform X2 [Benincasa hispida]1.7e-3982.47Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        M+  SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSR RLC+RACGTCC+RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LNS5 Uncharacterized protein4.3e-3676.29Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        M I +K L ASLLLSLLFLH VES G  ++ P+P++MDC GAC  RC LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

A0A1S3BBY7 snakin-2-like3.0e-3779.38Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        M+I +KAL ASLLLSLLFLH VES G  ++  SPQKMDC GAC  RC LSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

A0A6J1CRW3 snakin-2-like3.4e-3370.64Show/hide
Query:  MAISSKALIAS--LLLSLLFLHS---------VESIGAAMVSPS-PQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLT
        M++ SK LI +  LL SLLFLH+         VES+  A +SPS P KMDCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++T
Subjt:  MAISSKALIAS--LLLSLLFLHS---------VESIGAAMVSPS-PQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLT

Query:  THGGRLKCP
        THGGR KCP
Subjt:  THGGRLKCP

A0A6J1GJ50 snakin-2-like3.7e-48100Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

A0A6J1KTY1 snakin-2-like8.3e-4898.97Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHH+CPCYASLTTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 118.6e-2663.04Show/hide
Query:  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        + L+ASLL+SLL L  V +    + S    K+DC   C  RC LSSRP LCHRACGTCC RCNCV PGTSGN+  CPCY SLTTHGGR KCP
Subjt:  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

P46687 Gibberellin-regulated protein 31.6e-2457.58Show/hide
Query:  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAI    L+  L+L  L  F   V +   + V     K+DCGG C  RC  SSRP LC RAC +CC RCNCVPPGT+GNHH+CPCYAS+TT GGRLKCP
Subjt:  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

P46688 Gibberellin-regulated protein 24.7e-2455.56Show/hide
Query:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MA+    L+  L++  L  +   V +   A V     K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN H+CPCYAS+TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

P46689 Gibberellin-regulated protein 14.9e-2968.69Show/hide
Query:  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAI SKALIASLL+SLL L  V++    +   +   +K+DCG AC ARCRLS RPRLCHRACGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Subjt:  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

Q93X17 Snakin-21.0e-3170.48Show/hide
Query:  MAISSKALIASLLLSLLFLHSVESIGAAMVSP--------SPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGG
        MAI SKAL ASLLLSLL L  V+SI    V+         S +K+DCGGACAARCRLSSRPRLC+RACGTCC RCNCVPPGTSGN   CPCYASLTTHG 
Subjt:  MAISSKALIASLLLSLLFLHSVESIGAAMVSP--------SPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGG

Query:  RLKCP
        + KCP
Subjt:  RLKCP

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 13.5e-3068.69Show/hide
Query:  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAI SKALIASLL+SLL L  V++    +   +   +K+DCG AC ARCRLS RPRLCHRACGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Subjt:  MAISSKALIASLLLSLLFLHSVES--IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

AT1G75750.2 GAST1 protein homolog 12.6e-3069.39Show/hide
Query:  MAISSKALIASLLLSLLFLHSVES-IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAI SKALIASLL+SLL L  V++   +   +   +K+DCG AC ARCRLS RPRLCHRACGTCC RCNCVPPGT GN+  C CYASLTTHGGR KCP
Subjt:  MAISSKALIASLLLSLLFLHSVES-IGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

AT2G18420.1 Gibberellin-regulated family protein6.1e-2763.04Show/hide
Query:  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        + L+ASLL+SLL L  V +    + S    K+DC   C  RC LSSRP LCHRACGTCC RCNCV PGTSGN+  CPCY SLTTHGGR KCP
Subjt:  KALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

AT4G09600.1 GAST1 protein homolog 31.1e-2557.58Show/hide
Query:  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MAI    L+  L+L  L  F   V +   + V     K+DCGG C  RC  SSRP LC RAC +CC RCNCVPPGT+GNHH+CPCYAS+TT GGRLKCP
Subjt:  MAISSKALIASLLLSLL--FLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP

AT4G09610.1 GAST1 protein homolog 23.3e-2555.56Show/hide
Query:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP
        MA+    L+  L++  L  +   V +   A V     K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN H+CPCYAS+TTHGGRLKCP
Subjt:  MAISSKALIASLLLSLLFLHS--VESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATCTCCTCCAAAGCTCTCATTGCTTCCCTCCTCCTCTCTCTCCTCTTCCTCCACTCTGTGGAATCCATTGGAGCTGCTATGGTCTCCCCAAGCCCTCAGAAAAT
GGACTGCGGCGGCGCGTGTGCGGCAAGGTGCCGGCTGTCGTCGAGGCCGAGGCTGTGCCATAGGGCGTGCGGGACGTGCTGTCAGCGGTGCAACTGTGTTCCGCCGGGGA
CTTCCGGCAACCACCATATGTGCCCCTGCTACGCCAGCTTGACCACCCACGGCGGCCGCCTCAAGTGTCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATCTCCAAAATGGCTATCTCCTCCAAAGCTCTCATTGCTTCCCTCCTCCTCTCTCTCCTCTTCCTCCACTCTGTGGAATCCATTGGAGCTGCTATGGTCTCCCCAAGCCC
TCAGAAAATGGACTGCGGCGGCGCGTGTGCGGCAAGGTGCCGGCTGTCGTCGAGGCCGAGGCTGTGCCATAGGGCGTGCGGGACGTGCTGTCAGCGGTGCAACTGTGTTC
CGCCGGGGACTTCCGGCAACCACCATATGTGCCCCTGCTACGCCAGCTTGACCACCCACGGCGGCCGCCTCAAGTGTCCCTGAGTTCGCCGTCTCTCAACTCGTTTATGT
GTAAATCGTTCACGCTCTTTTGTTTTGTGTTTTAAAGGATATATGAATATCATAAACTGTGTCTCTTTTGTTGTAATAAAGGTGACGTGTCTTGCCTCTGTGTAGTTCTC
TGTTCTTATTTTATTTTATTTTATTTTTTGAAAATGATAGTAGAAAGGGTAATTTCGTAAATTTGGATTTATTTGTAAATAAATAAAAA
Protein sequenceShow/hide protein sequence
MAISSKALIASLLLSLLFLHSVESIGAAMVSPSPQKMDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP