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Carg04001 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04001
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionauxin-responsive protein SAUR50-like
Genome locationCarg_Chr12:2504595..2506376
RNA-Seq ExpressionCarg04001
SyntenyCarg04001
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585548.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4698.97Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLST EFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

KAG7020460.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-110100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQT
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQT
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQT

Query:  LDGVSAFSLFLKRGRTRGGVPTRFKALRGNSKGKAQRGQYLLVVDLGCYTQSTLIRARRPCWHTASCPLLFEAQPPHWHIDWCLILISFVTPQSLR
        LDGVSAFSLFLKRGRTRGGVPTRFKALRGNSKGKAQRGQYLLVVDLGCYTQSTLIRARRPCWHTASCPLLFEAQPPHWHIDWCLILISFVTPQSLR
Subjt:  LDGVSAFSLFLKRGRTRGGVPTRFKALRGNSKGKAQRGQYLLVVDLGCYTQSTLIRARRPCWHTASCPLLFEAQPPHWHIDWCLILISFVTPQSLR

XP_022951771.1 auxin-responsive protein SAUR50-like [Cucurbita moschata]1.6e-47100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

XP_023002557.1 auxin-responsive protein SAUR50-like [Cucurbita maxima]4.2e-4595Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAV++RLSQAAVVKQIMKRCSSLRNKKTHQCGGA   GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

XP_023538452.1 auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]4.5e-4798.97Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAVTSRLSQAAVVKQIMKRCSSLRNKK+HQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

TrEMBL top hitse value%identityAlignment
A0A1S3BB62 auxin-induced protein 15A-like4.4e-3271.56Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM
        MAV+++L+  AVVKQI KRCSSLR          N  TH  QCGG GG +IPVDVPKGHFVVYV ENRSRYIVP+TFL+ PEFQILLQLAEEEFGFSH M
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM

Query:  GLTIPCDEK
        GLTIPC+E+
Subjt:  GLTIPCDEK

A0A5A7VD05 Auxin-induced protein 15A-like4.4e-3271.56Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM
        MAV+++L+  AVVKQI KRCSSLR          N  TH  QCGG GG +IPVDVPKGHFVVYV ENRSRYIVP+TFL+ PEFQILLQLAEEEFGFSH M
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM

Query:  GLTIPCDEK
        GLTIPC+E+
Subjt:  GLTIPCDEK

A0A6J1GIF7 auxin-responsive protein SAUR50-like7.5e-48100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

A0A6J1K8F3 auxin-responsive protein SAUR50-like5.8e-3277.66Show/hide
Query:  AVVKQIMKRCSSLRNKKTH----QCGGAGG---GDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        AVVKQIMKRCS LR+ K      QCGG GG   G+IPVDVPKGHFVVYV ENRSRYIVP+T L++PEFQILLQLAEEEFGFSHHMGLTIPC+E+
Subjt:  AVVKQIMKRCSSLRNKKTH----QCGGAGG---GDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

A0A6J1KJU9 auxin-responsive protein SAUR50-like2.0e-4595Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAV++RLSQAAVVKQIMKRCSSLRNKKTHQCGGA   GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

SwissProt top hitse value%identityAlignment
O65695 Auxin-responsive protein SAUR504.4e-2967.71Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        M  TS+L+Q A++KQI+KRCSSL  K     GG     +P+DVPKGHF VYVGENRSRYIVP++FL+ PEFQ LLQ AEEEFGF H MGLTIPCDE
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

P0DKL1 Auxin-responsive protein SAUR503.4e-2152.94Show/hide
Query:  SQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQTLDGVSAF
        +QA  +K+I+K+CSS   K     G      +P DVPKGHFVVYVGE R+RYIVP++ L  P FQ LLQ +EEEFGF+H MG+ IPC E    +D +S F
Subjt:  SQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQTLDGVSAF

Query:  SL
        S+
Subjt:  SL

P33080 Auxin-induced protein X10A5.8e-1359.65Show/hide
Query:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDE
        V+VPKG+ VVYVG+   R+++PV++L+ P FQ LL  AEEEFG+ H M GLTIPC E
Subjt:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDE

P33082 Auxin-induced protein X155.8e-1356.9Show/hide
Query:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEK
        VD PKG+  VYVGE   R+++PV++++ P FQ LL  AEEEFG+ H M GLTIPC E+
Subjt:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEK

Q9SL45 Protein SMALL AUXIN UP-REGULATED RNA 101.6e-2667.78Show/hide
Query:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        SQAA +KQI+KRCSSLR  K  + C      D+P DVPKGHF VYVG NRSRYIVP+++L   EFQ LL+LAEEEFGF H MGLTIPCDE
Subjt:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

Arabidopsis top hitse value%identityAlignment
AT1G19830.1 SAUR-like auxin-responsive protein family1.0e-2860Show/hide
Query:  SRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        S+L+Q  ++KQI+KRCSSL  K++ +        G  +P+DVPKGHFVVYVG NR RY++P++FL+ PEFQ+LLQ AEEEFGF H+MGLTIPC+E
Subjt:  SRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

AT1G75580.1 SAUR-like auxin-responsive protein family2.0e-2962.5Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        M   ++L+Q A++KQI+KRCSSL  K+++  G    G  P++VPKGHFVVYVGENR RY+VP++FL+ PEFQ+LLQ AEEEFGF H MGLTIPC+E
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

AT2G18010.1 SAUR-like auxin-responsive protein family1.1e-2767.78Show/hide
Query:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        SQAA +KQI+KRCSSLR  K  + C      D+P DVPKGHF VYVG NRSRYIVP+++L   EFQ LL+LAEEEFGF H MGLTIPCDE
Subjt:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

AT2G21220.1 SAUR-like auxin-responsive protein family8.5e-2864.52Show/hide
Query:  TSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        +S+L+Q A++KQI+KRCSSL     +QC    G  +PVDVPKGHF VYVGE RSRYIVP++FL+ P+F+ LLQ AEEEFGF+H MGLTIPC+E
Subjt:  TSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE

AT4G34760.1 SAUR-like auxin-responsive protein family3.1e-3067.71Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE
        M  TS+L+Q A++KQI+KRCSSL  K     GG     +P+DVPKGHF VYVGENRSRYIVP++FL+ PEFQ LLQ AEEEFGF H MGLTIPCDE
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTGACCAGCAGACTGTCACAGGCGGCGGTGGTCAAGCAAATTATGAAGCGCTGTTCCAGTTTAAGAAATAAAAAGACACACCAATGCGGCGGCGCTGGCGGCGG
AGATATACCGGTGGATGTTCCCAAAGGCCATTTTGTGGTGTATGTGGGTGAGAATAGAAGCCGGTACATTGTGCCGGTGACGTTTCTGTCGACGCCGGAGTTTCAGATTC
TTCTCCAATTGGCTGAGGAAGAGTTCGGGTTTAGTCACCATATGGGCCTCACTATCCCGTGCGACGAGAAGAGCCAGACATTGGACGGTGTGTCAGCCTTCTCGCTGTTC
CTCAAAAGGGGTAGGACACGAGGCGGTGTGCCAACGCGTTTTAAAGCTTTGAGAGGAAACTCGAAAGGGAAAGCTCAAAGAGGGCAATATCTGCTAGTGGTGGATCTGGG
TTGTTACACCCAATCCACCCTCATTCGGGCCCGACGTCCTTGTTGGCACACCGCCTCTTGTCCACTCCTCTTCGAGGCTCAGCCTCCTCATTGGCACATCGATTGGTGTT
TGATTCTAATATCATTTGTGACGCCCCAATCTCTCCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTGACCAGCAGACTGTCACAGGCGGCGGTGGTCAAGCAAATTATGAAGCGCTGTTCCAGTTTAAGAAATAAAAAGACACACCAATGCGGCGGCGCTGGCGGCGG
AGATATACCGGTGGATGTTCCCAAAGGCCATTTTGTGGTGTATGTGGGTGAGAATAGAAGCCGGTACATTGTGCCGGTGACGTTTCTGTCGACGCCGGAGTTTCAGATTC
TTCTCCAATTGGCTGAGGAAGAGTTCGGGTTTAGTCACCATATGGGCCTCACTATCCCGTGCGACGAGAAGAGCCAGACATTGGACGGTGTGTCAGCCTTCTCGCTGTTC
CTCAAAAGGGGTAGGACACGAGGCGGTGTGCCAACGCGTTTTAAAGCTTTGAGAGGAAACTCGAAAGGGAAAGCTCAAAGAGGGCAATATCTGCTAGTGGTGGATCTGGG
TTGTTACACCCAATCCACCCTCATTCGGGCCCGACGTCCTTGTTGGCACACCGCCTCTTGTCCACTCCTCTTCGAGGCTCAGCCTCCTCATTGGCACATCGATTGGTGTT
TGATTCTAATATCATTTGTGACGCCCCAATCTCTCCGCTAG
Protein sequenceShow/hide protein sequence
MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKSQTLDGVSAFSLF
LKRGRTRGGVPTRFKALRGNSKGKAQRGQYLLVVDLGCYTQSTLIRARRPCWHTASCPLLFEAQPPHWHIDWCLILISFVTPQSLR