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Carg04037 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04037
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSm protein F
Genome locationCarg_Chr12:2747742..2749801
RNA-Seq ExpressionCarg04037
SyntenyCarg04037
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598461.1 Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4198.84Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAER
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]6.2e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]5.3e-4095.4Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+ED ER+
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

XP_022951684.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]1.9e-42100Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]3.3e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F3.0e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

A0A5D3DWN8 Sm protein F3.0e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

A0A6J1GJI4 Sm protein F9.4e-43100Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

A0A6J1HD26 Sm protein F1.6e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

A0A6J1KQT2 Sm protein F1.6e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F2.2e-3380Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

P62307 Small nuclear ribonucleoprotein F2.2e-3380Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

P62321 Small nuclear ribonucleoprotein F2.2e-3380Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F2.2e-3380Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F1.1e-4089.53Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein9.3e-2788.52Show/hide
Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein5.3e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein5.3e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F7.9e-4289.53Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

AT4G30220.2 small nuclear ribonucleoprotein F7.9e-4289.53Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGCTTTCTGGTCTCTGTAGA
CTCGTACATGAACTTACAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCG
GAGTACCAGAGGACGAAGAGCTTGAAGATGCCGAGCGCGACTAA
mRNA sequenceShow/hide mRNA sequence
AACGAAAGGGAAAAGGGGAGGGAAAACAAACCCTAGAGAGAAAGAGCGCCATTTTCTTCGTCTCCTCGTTCTTTTGAGCCTCCGTTGATCCCAGAGAAGCGCTTGCAGAT
CATTCGGAACCATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGCTTTCTG
GTCTCTGTAGACTCGTACATGAACTTACAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCT
TTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCCGAGCGCGACTAACATGTAAATTTGTAGCAGCCAGCTCTGCCATGCCATAGTAGCAGCTAAGTTTTCA
GCCTTCTAGTTTCCTAGTTTTCCTTTCATCTGCTGCTTAAGTTGCATCTTGTTGCTATTGGTACTACCTTATAGGACACGATCATTCTCTGCTTTTAGTCGATTTCGAAC
CTGCACGATCATTCTAGGGAGATTGAATGGTAGAAAAGGAATTCATGAATGTAACATCTTTATGTCTTTATAGCATTGAAATGCTTCATTTTTTCGACATAAGATAAGCT
AGAGCGTTACATAAATCTTTCATGTGGAATGCAATGCAATGACATATATTTGTAATATCATTAGCTTTGAGTTTTGGATAAAATCTGTAGCCATTGTT
Protein sequenceShow/hide protein sequence
MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD