; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04045 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04045
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationCarg_Chr12:2777379..2777968
RNA-Seq ExpressionCarg04045
SyntenyCarg04045
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]2.0e-67100Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

XP_022951681.1 uncharacterized protein LOC111454424 [Cucurbita moschata]1.3e-6699.24Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVD DTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

XP_023002545.1 uncharacterized protein LOC111496358 [Cucurbita maxima]1.0e-6699.24Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIG AEKEVFAESDLERKNLEKLKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

XP_023536775.1 uncharacterized protein LOC111798054 [Cucurbita pepo subsp. pepo]3.8e-6697.73Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRA+SMPVDRDTVGIDYKRSSSFPAAIGKAEKEVF ESDLERKNLE LKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]1.2e-5180.74Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV----DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKN
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYWKSK+K EEEHLRAISMPV    DR+TVGIDYKRSSSFP A   + +  FAE+DLER+NLEKLKK 
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV----DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKN

Query:  GWWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS
        GWW RSNSAFLNEPPVLDGA K YAS YGV DVAS
Subjt:  GWWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS

TrEMBL top hitse value%identityAlignment
A0A1S3BBS7 uncharacterized protein LOC1034879791.6e-4978.36Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV---DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNG
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLEEEHLRAIS+PV   DR+ VGIDYKRSSSFP A   A +  F E+ L+RKNLE+L+K G
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV---DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNG

Query:  WWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS
        WW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  WWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS

A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A1.6e-4978.36Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV---DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNG
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLEEEHLRAIS+PV   DR+ VGIDYKRSSSFP A   A +  F E+ L+RKNLE+L+K G
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPV---DRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNG

Query:  WWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS
        WW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  WWRRSNSAFLNEPPVLDGAAKAYASQYGVTDVAS

A0A6J1CTD0 uncharacterized protein LOC1110140334.6e-4981.25Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMP----VDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKN
        MGSLM GWNSPV DPKSVKFKRNRSLTKEEIEAYW+SKRKLEEEHLRAISMP    VDRD VGIDYKRSSSFP A G AE+     SD ERKNLEKLK N
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMP----VDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKN

Query:  GWWRRSNSAFLNEPPVLDGAAKAYASQY
         WW RSNSAFLNEPPVLDGAAKAYA+ +
Subjt:  GWWRRSNSAFLNEPPVLDGAAKAYASQY

A0A6J1GI71 uncharacterized protein LOC1114544246.4e-6799.24Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVD DTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

A0A6J1KP90 uncharacterized protein LOC1114963584.9e-6799.24Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIG AEKEVFAESDLERKNLEKLKKNGWWR
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWR

Query:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
        RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF
Subjt:  RSNSAFLNEPPVLDGAAKAYASQYGVTDVASF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein1.7e-1639.69Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWW
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +WK+K+K  EEEH++A S  V ++              A  +A+++   +   E ++    K +GWW
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWW

Query:  RRSNSAFLNEPPVLDGAAKAYASQYGVTDVA
        R++  AFLNEP   +G    Y SQ+ V  +A
Subjt:  RRSNSAFLNEPPVLDGAAKAYASQYGVTDVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTGATGGGCGGGTGGAACTCTCCCGTTCTCGATCCTAAATCCGTCAAGTTTAAGAGGAATCGATCGCTTACTAAGGAGGAAATCGAAGCTTACTGGAAATC
GAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGCGATACGGTCGGAATAGACTACAAGAGATCGAGTTCGTTTCCTGCGGCGATCGGTA
AGGCGGAGAAAGAAGTGTTTGCGGAAAGCGATTTGGAGAGGAAAAACCTAGAGAAGTTGAAGAAAAATGGCTGGTGGAGGAGGAGCAATTCTGCTTTTCTGAACGAACCG
CCTGTCCTCGACGGCGCTGCAAAAGCGTATGCGTCTCAGTACGGCGTCACAGACGTGGCGTCGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTGATGGGCGGGTGGAACTCTCCCGTTCTCGATCCTAAATCCGTCAAGTTTAAGAGGAATCGATCGCTTACTAAGGAGGAAATCGAAGCTTACTGGAAATC
GAAGAGGAAATTGGAGGAAGAACATCTCAGAGCGATTTCTATGCCGGTGGATCGCGATACGGTCGGAATAGACTACAAGAGATCGAGTTCGTTTCCTGCGGCGATCGGTA
AGGCGGAGAAAGAAGTGTTTGCGGAAAGCGATTTGGAGAGGAAAAACCTAGAGAAGTTGAAGAAAAATGGCTGGTGGAGGAGGAGCAATTCTGCTTTTCTGAACGAACCG
CCTGTCCTCGACGGCGCTGCAAAAGCGTATGCGTCTCAGTACGGCGTCACAGACGTGGCGTCGTTCTAG
Protein sequenceShow/hide protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEEEHLRAISMPVDRDTVGIDYKRSSSFPAAIGKAEKEVFAESDLERKNLEKLKKNGWWRRSNSAFLNEP
PVLDGAAKAYASQYGVTDVASF