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Carg04049 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04049
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 4
Genome locationCarg_Chr12:2794670..2795828
RNA-Seq ExpressionCarg04049
SyntenyCarg04049
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585593.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.7e-45100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

XP_022951683.1 protein RADIALIS-like 4 [Cucurbita moschata]8.5e-50100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]2.9e-4287.13Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_023002562.1 protein RADIALIS-like 4 [Cucurbita maxima]5.5e-4998.02Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_023538249.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]1.9e-4999.01Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein1.9e-3983.17Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MAS++F+SSG+SSSSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKT EEVKRHYDIL+ DLMHIESGKVPLP YKPIA N  +  DEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1GIE7 protein RADIALIS-like 44.1e-50100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1HFA3 protein RADIALIS-like 41.4e-4287.13Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 41.4e-4287.13Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1KJV3 protein RADIALIS-like 42.7e-4998.02Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI SNSIVCGDEQRLMKNLKL
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.1e-2254.37Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNL
        MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LV D+  IE+G VP P Y+     +N  +  +E+R M+N+
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 64.0e-2664.36Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLK
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS    D + R MKNLK
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLK

Query:  L
        +
Subjt:  L

Q6NNN0 Protein RADIALIS-like 38.7e-2160.71Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASN
        MASN    S SSS+SWT K+NK FE ALA Y +DTPDRW  VARAVGGK+AEEV+RHY++L+ D+  IESG+ P P Y+   +N
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASN

Q8GW75 Protein RADIALIS-like 51.1e-2665.98Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ
        SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+IE   VPLPKYK +   S   G +    RLMKN+++Q
Subjt:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 23.2e-2357.28Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNL
        MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+LV D+  IE+G VP P YK    NS      DE++ M+++
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.5e-2865.98Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ
        SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+IE   VPLPKYK +   S   G +    RLMKN+++Q
Subjt:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQ---RLMKNLKLQ

AT1G75250.1 RAD-like 64.5e-2568.24Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

AT1G75250.2 RAD-like 62.8e-2764.36Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLK
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS    D + R MKNLK
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGD-EQRLMKNLK

Query:  L
        +
Subjt:  L

AT2G21650.1 Homeodomain-like superfamily protein2.3e-2457.28Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNL
        MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+LV D+  IE+G VP P YK    NS      DE++ M+++
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSI--VCGDEQRLMKNL

Query:  KLQ
        KLQ
Subjt:  KLQ

AT4G39250.1 RAD-like 11.5e-2354.37Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNL
        MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LV D+  IE+G VP P Y+     +N  +  +E+R M+N+
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI--ASNSIVCGDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAACACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGA
CCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTC
CTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAACACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGA
CCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTC
CTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA
Protein sequenceShow/hide protein sequence
MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQRLMKNLKLQ