; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04053 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04053
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChloroplast thylakoid membrane
Genome locationCarg_Chr12:2815478..2817800
RNA-Seq ExpressionCarg04053
SyntenyCarg04053
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585599.1 hypothetical protein SDJN03_18332, partial [Cucurbita argyrosperma subsp. sororia]9.9e-5995.97Show/hide
Query:  MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFL
        MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQE QLQRRQFPITTSRRGLTMISFL
Subjt:  MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFL

Query:  AAIPSLFLPAPAAALNLGISNAFD
        AA+PSLFLPAPAAALNLGIS   D
Subjt:  AAIPSLFLPAPAAALNLGISNAFD

KAG6585830.1 hypothetical protein SDJN03_18563, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3673.23Show/hide
Query:  MISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMS
        MISFLAA+PSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLM+ +                     F++       LVAANAFDYSNKDMENVRRMLMS
Subjt:  MISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMS

Query:  VARHCVLKDRNSFVQFQASTGVEVLSS
        VARHCVLKDRNSFVQFQASTGVEVLSS
Subjt:  VARHCVLKDRNSFVQFQASTGVEVLSS

KAG7020512.1 hypothetical protein SDJN02_17197, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-119100Show/hide
Query:  MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFL
        MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFL
Subjt:  MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFL

Query:  AAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHC
        AAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHC
Subjt:  AAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHC

Query:  VLKDRNSFVQFQASTGVEVLSS
        VLKDRNSFVQFQASTGVEVLSS
Subjt:  VLKDRNSFVQFQASTGVEVLSS

XP_038884855.1 uncharacterized protein LOC120075490 isoform X1 [Benincasa hispida]4.3e-3051.23Show/hide
Query:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL
        +A+S   P S + NNDPFQESQ  R Q PITTSRRGLTM+SF++A+PSLFLPAPA A N+GIS   D+  +  +   + L++ +       R+S      
Subjt:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL

Query:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
                      +L+ +N  DYSNKDME+V R+L S AR CVLKDRNSFVQFQASTGVEV
Subjt:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

XP_038884858.1 uncharacterized protein LOC120075490 isoform X3 [Benincasa hispida]4.3e-3051.23Show/hide
Query:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL
        +A+S   P S + NNDPFQESQ  R Q PITTSRRGLTM+SF++A+PSLFLPAPA A N+GIS   D+  +  +   + L++ +       R+S      
Subjt:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL

Query:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
                      +L+ +N  DYSNKDME+V R+L S AR CVLKDRNSFVQFQASTGVEV
Subjt:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

TrEMBL top hitse value%identityAlignment
A0A0A0LPA8 Uncharacterized protein3.4e-2848.77Show/hide
Query:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL
        S  +   PPS   NND FQE Q  R Q PITTSRRGLTM+SF++A+PSLFLPAPA+A ++GIS   D+  +  +   + L++ +       R+S      
Subjt:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL

Query:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
                       L+ +N  DYS+KDME+V+R+L S AR CVLKDRNSFVQFQASTGVEV
Subjt:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

A0A1S3BAY8 uncharacterized protein LOC1034879715.7e-2850.32Show/hide
Query:  PPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFD
        PPS   N+D FQESQ  R Q PITTSRRGLTM+SF++A+PSLFLPAPA+A ++GIS   D+  +  +   + L++ +       R+S             
Subjt:  PPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFD

Query:  YSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
                L+ +N  DYSNKDME+V+R+L S AR CVLKDR+SFVQFQASTGVEV
Subjt:  YSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

A0A5A7VAP0 Chloroplast thylakoid membrane5.7e-2850.32Show/hide
Query:  PPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFD
        PPS   N+D FQESQ  R Q PITTSRRGLTM+SF++A+PSLFLPAPA+A ++GIS   D+  +  +   + L++ +       R+S             
Subjt:  PPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFD

Query:  YSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
                L+ +N  DYSNKDME+V+R+L S AR CVLKDR+SFVQFQASTGVEV
Subjt:  YSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

A0A6J1K7N2 uncharacterized protein LOC111492399 isoform X22.7e-2550Show/hide
Query:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL
        SA+S     SH   +D   +SQ  R   PITTSRRGLTM+SFL+A+PSLFLPAPA A ++GIS   D+  +  +   R L++ +       R+S     L
Subjt:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL

Query:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
        + +N   YS             DYSNKDME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Subjt:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

A0A6J1K9U3 uncharacterized protein LOC111492399 isoform X12.7e-2550Show/hide
Query:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL
        SA+S     SH   +D   +SQ  R   PITTSRRGLTM+SFL+A+PSLFLPAPA A ++GIS   D+  +  +   R L++ +       R+S     L
Subjt:  SALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPAPAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQL

Query:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
        + +N   YS             DYSNKDME+V+RML S AR CVLKDRNSFVQFQASTGVEV
Subjt:  VAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42765.1 INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.0e-0552.5Show/hide
Query:  DYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV
        DY+ KD+EN++ +  S AR CV K+R+S V FQ+ +GVEV
Subjt:  DYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCCGTTAGGGGAATTTGAAGCGTCATCGAAAAGGAATGGTGGATTCGCGCCACGTGGGAACTGGCTAAGAGAGAGAAAGAAGAGAGAGATTGTGGATGACGATTG
CTGTTTGATGGGACGGCGGCGATCGGCTCCGCCGATGAAGAAGCTACGACAACGATCGGACTCCGCATTATCTCGGTTCCAACCGCCGTCTCACGATCAGAACAATGATC
CATTCCAAGAAAGCCAATTGCAGCGCCGTCAGTTTCCGATCACAACATCTCGTAGAGGCCTCACTATGATCTCATTTCTCGCTGCGATTCCGTCTCTGTTTCTACCTGCT
CCTGCCGCTGCTTTGAATCTCGGCATTTCTAATGCGTTCGATTACTCGAACAAGGATATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGTAAGGCATTGCGTTTTGAA
CGACAGGAATTCCTTTGTTCAATTTCAACTAGTTGCAGCCAATGCGTTTGATTACTCGAACAAGGATATGGAGAATCTAGTTGCAGCCAATGCGTTTGATTACTCGAACA
AGGATATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTA
TCTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCCGTTAGGGGAATTTGAAGCGTCATCGAAAAGGAATGGTGGATTCGCGCCACGTGGGAACTGGCTAAGAGAGAGAAAGAAGAGAGAGATTGTGGATGACGATTG
CTGTTTGATGGGACGGCGGCGATCGGCTCCGCCGATGAAGAAGCTACGACAACGATCGGACTCCGCATTATCTCGGTTCCAACCGCCGTCTCACGATCAGAACAATGATC
CATTCCAAGAAAGCCAATTGCAGCGCCGTCAGTTTCCGATCACAACATCTCGTAGAGGCCTCACTATGATCTCATTTCTCGCTGCGATTCCGTCTCTGTTTCTACCTGCT
CCTGCCGCTGCTTTGAATCTCGGCATTTCTAATGCGTTCGATTACTCGAACAAGGATATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGTAAGGCATTGCGTTTTGAA
CGACAGGAATTCCTTTGTTCAATTTCAACTAGTTGCAGCCAATGCGTTTGATTACTCGAACAAGGATATGGAGAATCTAGTTGCAGCCAATGCGTTTGATTACTCGAACA
AGGATATGGAGAATGTTCGAAGAATGCTCATGTCTGTTGCAAGGCATTGCGTTTTGAAGGACAGGAATTCCTTTGTTCAATTTCAAGCAAGCACAGGAGTCGAGGTTCTA
TCTTCCTAA
Protein sequenceShow/hide protein sequence
MVPLGEFEASSKRNGGFAPRGNWLRERKKREIVDDDCCLMGRRRSAPPMKKLRQRSDSALSRFQPPSHDQNNDPFQESQLQRRQFPITTSRRGLTMISFLAAIPSLFLPA
PAAALNLGISNAFDYSNKDMENVRRMLMSVVRHCVLNDRNSFVQFQLVAANAFDYSNKDMENLVAANAFDYSNKDMENVRRMLMSVARHCVLKDRNSFVQFQASTGVEVL
SS