; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04055 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04055
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 4
Genome locationCarg_Chr12:2828093..2828424
RNA-Seq ExpressionCarg04055
SyntenyCarg04055
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0047429 - nucleoside-triphosphate diphosphatase activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585601.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]2.1e-39100Show/hide
Query:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
        MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
Subjt:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ

KAG7020514.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-40100Show/hide
Query:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
        MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
Subjt:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

XP_022951876.1 protein RADIALIS-like 4, partial [Cucurbita moschata]2.6e-3796.59Show/hide
Query:  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
        SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS+QYYSNEQ
Subjt:  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ

XP_023002559.1 protein RADIALIS-like 4 [Cucurbita maxima]2.7e-3494.12Show/hide
Query:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN
        SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS QYYSN
Subjt:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN

XP_023537868.1 protein RADIALIS-like 4, partial [Cucurbita pepo subsp. pepo]1.3e-3696.55Show/hide
Query:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
        SSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQ YSNEQ
Subjt:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ

TrEMBL top hitse value%identityAlignment
A0A1S3BBR2 protein RADIALIS-like 49.0e-2876.09Show/hide
Query:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSN--SSNQYYSNEQ
        M+SS++SSSSSSS+SWS KQNK+FENALT+YDKDSPDRWQK+A AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNYS   S N +   EQ
Subjt:  MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSN--SSNQYYSNEQ

A0A6J1GIQ1 protein RADIALIS-like 41.3e-3796.59Show/hide
Query:  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ
        SSSSSSSSSSSNSWSPKQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS+QYYSNEQ
Subjt:  SSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQ

A0A6J1HEM1 protein RADIALIS-like 62.4e-2884.81Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQ
        +SSSSSSS+SWS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNYS  S Q
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQ

A0A6J1K580 protein RADIALIS-like 46.9e-2880.95Show/hide
Query:  SSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN
        +SSSSSSSS+ WS KQNKVFENALT+YDKDSPDRWQK+A +VGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNYS  S    SN
Subjt:  SSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN

A0A6J1KQS6 protein RADIALIS-like 41.3e-3494.12Show/hide
Query:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN
        SSSSSSSSSSN WS KQNKVFENALT+YDKDSPDRWQK+AGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS QYYSN
Subjt:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.6e-2164.1Show/hide
Query:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNS
        +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+D+++IE G +P PNY  S
Subjt:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNS

Q1A173 Protein RADIALIS-like 67.9e-2159.77Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
        +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+ NIE GR+PLPNY      + SN +S+
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

Q1G3C4 Protein RADIALIS-like 44.3e-1959.21Show/hide
Query:  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS
        +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV++IE GR P P Y N++
Subjt:  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS

Q6NNN0 Protein RADIALIS-like 32.3e-2060Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQY
        +S+S SSS SW+ K+NK+FE AL  YD+D+PDRW  VA AVGGK+AEEV+RHYE+L+ DV++IE GR P PNY ++ N +
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQY

Q8GW75 Protein RADIALIS-like 51.0e-2068.49Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNY
        +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.3e-2268.49Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNY
        +SSS SSS+SW+ KQNK+FE AL +YDKD+PDRWQ VA AVG K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNY

AT1G75250.1 RAD-like 65.6e-2259.77Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
        +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+ NIE GR+PLPNY      + SN +S+
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

AT1G75250.2 RAD-like 65.6e-2259.77Show/hide
Query:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV
        +S+S SS + W+  QNK+FE AL +YDKD+PDRW  VA AVGGKT EEVKRHY++LVED+ NIE GR+PLPNY      + SN +S+
Subjt:  SSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV

AT2G18328.1 RAD-like 43.1e-2059.21Show/hide
Query:  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS
        +SSS S++SW+ +++K FE AL  +DKD+PDRWQK+A AVGGK+ EEVKRHYE+L+ DV++IE GR P P Y N++
Subjt:  SSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSS

AT4G39250.1 RAD-like 13.3e-2264.1Show/hide
Query:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNS
        +SSS SS SS SW+ KQNK FE AL  YD+D+P+RWQ VA  VGGKT EEVKRHYE+LV+D+++IE G +P PNY  S
Subjt:  SSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGA
CCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTC
CTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTCTTCTTCATCTTCTTCATCGTCAAGCTCCAACTCATGGAGTCCAAAGCAAAACAAGGTGTTCGAAAATGCTCTAACGTTGTACGACAAGGACTCGCCGGA
CCGGTGGCAGAAGGTGGCCGGAGCTGTCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCATAATATTGAGATTGGAAGAATTC
CTTTGCCCAATTACTCCAATTCTTCTAACCAATATTACTCCAACGAACAAAGCGTTTGA
Protein sequenceShow/hide protein sequence
MSSSSSSSSSSSSNSWSPKQNKVFENALTLYDKDSPDRWQKVAGAVGGKTAEEVKRHYEMLVEDVHNIEIGRIPLPNYSNSSNQYYSNEQSV