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Carg04083 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04083
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexpansin-like A2
Genome locationCarg_Chr19:7489647..7490439
RNA-Seq ExpressionCarg04083
SyntenyCarg04083
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011799.1 hypothetical protein SDJN02_26705, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-46100Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGACRTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKRSHYKSIFVGFNLNLQDTM
        MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGACRTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKRSHYKSIFVGFNLNLQDTM
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGACRTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKRSHYKSIFVGFNLNLQDTM

XP_022135915.1 expansin-like A2 [Momordica charantia]1.7e-1845.26Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        M WLL  LFLLLASS+NACDRCIHQ+T  YYS +SPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RT FVLSKK FS+MA KG IQKLLNL ++DVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

XP_022952741.1 expansin-like A2 [Cucurbita moschata]2.0e-2757.66Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

XP_022969216.1 expansin-like A2 [Cucurbita maxima]1.8e-2554.74Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        MVWLLGLLFLLLAS +NACDRCIHQSTAAYYSA+SPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RTGFVLSKKGFSAMARKGNIQKLLNLT+IDVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

XP_023511627.1 expansin-like A2 [Cucurbita pepo subsp. pepo]2.2e-2656.2Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        MVWLLGLLFLLLAS +NACDRCIHQSTAAYYSANSPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

TrEMBL top hitse value%identityAlignment
A0A0A0K1G6 Uncharacterized protein2.9e-0836.76Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTS---------------NGW---------------GAC--------------------------
        M W L L F  L S +NACDRCIH+S A +Y  +SPTS               NG+               GAC                          
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTS---------------NGW---------------GAC--------------------------

Query:  -RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
         R  FVLS+K FSAMA KG  Q+LLN   +DVEYKR
Subjt:  -RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

A0A1S3BIG9 Expansin A3-like protein3.8e-0836.03Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTS------------------------------NGWGAC--------------------------
        M W L L F  L S +NACDRCIH+S A +Y  +SPTS                               G GAC                          
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTS------------------------------NGWGAC--------------------------

Query:  -RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
         R  FVLS+K FSAMA KG  Q+LLN   +DVEYKR
Subjt:  -RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

A0A6J1C2D8 expansin-like A28.1e-1945.26Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        M WLL  LFLLLASS+NACDRCIHQ+T  YYS +SPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RT FVLSKK FS+MA KG IQKLLNL ++DVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

A0A6J1GL20 expansin-like A29.5e-2857.66Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

A0A6J1HX48 expansin-like A28.9e-2654.74Show/hide
Query:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------
        MVWLLGLLFLLLAS +NACDRCIHQSTAAYYSA+SPTSNGWGAC                                                        
Subjt:  MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGAC--------------------------------------------------------

Query:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR
          RTGFVLSKKGFSAMARKGNIQKLLNLT+IDVEYKR
Subjt:  --RTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G45970.1 expansin-like A15.6e-0446.67Show/hide
Query:  LLFLLLASSSNACDRCIHQSTAAYYSANSPTSNG---WGACRTGF
        ++  L +SS NACDRC+H+S AAY+S+ S  S+G   +G+  T F
Subjt:  LLFLLLASSSNACDRCIHQSTAAYYSANSPTSNG---WGACRTGF

AT4G38400.1 expansin-like A22.5e-0449.06Show/hide
Query:  LLGLLF-----LLLASSSNACDRCIHQSTAAYYSANSPTSNG---WGACRTGF
        L G LF     LL +SS+ ACDRC+H S AAY+S+ S  S+G   +G+  TGF
Subjt:  LLGLLF-----LLLASSSNACDRCIHQSTAAYYSANSPTSNG---WGACRTGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTGGCTTCTTGGCTTACTCTTTCTACTTCTTGCTTCTTCTTCCAATGCTTGTGATCGCTGCATCCATCAGTCCACAGCGGCCTACTACTCAGCCAATTCACCTAC
TTCAAATGGATGGGGAGCATGTAGGACAGGGTTTGTTCTTAGTAAGAAAGGCTTCTCCGCCATGGCTCGAAAGGGTAACATCCAAAAGCTTTTAAACCTCACGAGCATCG
ATGTAGAATACAAGAGGTCTCATTATAAATCCATTTTTGTTGGGTTCAATCTTAACTTGCAGGATACCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTGGCTTCTTGGCTTACTCTTTCTACTTCTTGCTTCTTCTTCCAATGCTTGTGATCGCTGCATCCATCAGTCCACAGCGGCCTACTACTCAGCCAATTCACCTAC
TTCAAATGGATGGGGAGCATGTAGGACAGGGTTTGTTCTTAGTAAGAAAGGCTTCTCCGCCATGGCTCGAAAGGGTAACATCCAAAAGCTTTTAAACCTCACGAGCATCG
ATGTAGAATACAAGAGGTCTCATTATAAATCCATTTTTGTTGGGTTCAATCTTAACTTGCAGGATACCATGTGA
Protein sequenceShow/hide protein sequence
MVWLLGLLFLLLASSSNACDRCIHQSTAAYYSANSPTSNGWGACRTGFVLSKKGFSAMARKGNIQKLLNLTSIDVEYKRSHYKSIFVGFNLNLQDTM