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Carg04090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionubiquitin domain-containing protein DSK2a-like
Genome locationCarg_Chr19:7579384..7583761
RNA-Seq ExpressionCarg04090
SyntenyCarg04090
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function)
InterPro domainsIPR009060 - UBA-like superfamily
IPR015940 - Ubiquitin-associated domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572168.1 Ubiquitin domain-containing protein DSK2b, partial [Cucurbita argyrosperma subsp. sororia]2.3e-30100Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

KAG7011806.1 Ubiquitin domain-containing protein DSK2a [Cucurbita argyrosperma subsp. argyrosperma]2.3e-30100Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

XP_022952232.1 ubiquitin domain-containing protein DSK2b-like [Cucurbita moschata]8.9e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

XP_023554442.1 ubiquitin domain-containing protein DSK2b-like isoform X1 [Cucurbita pepo subsp. pepo]8.9e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

XP_023554444.1 ubiquitin domain-containing protein DSK2b-like isoform X2 [Cucurbita pepo subsp. pepo]8.9e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

TrEMBL top hitse value%identityAlignment
A0A6J1C5X7 ubiquitin domain-containing protein DSK2a-like2.8e-2997.14Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGN GQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

A0A6J1GJU4 ubiquitin domain-containing protein DSK2b-like4.3e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

A0A6J1HVA4 ubiquitin domain-containing protein DSK2b-like isoform X14.3e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

A0A6J1HZV5 ubiquitin domain-containing protein DSK2b-like isoform X24.3e-3098.57Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLMNLFGGLG GGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

A0A6J1JP60 ubiquitin domain-containing protein DSK2a1.8e-2894.29Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        MLM+LFGGLG GGLA  NNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

SwissProt top hitse value%identityAlignment
G5EFF7 Ubiquilin2.6e-0849.25Show/hide
Query:  LMNLFGGLGTGGLAVSNN-PNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGN
        L +LF  +  GG   S+    V PE+ YA+QL QLQ MGF D   N+ AL AT G+++AAVERLL +
Subjt:  LMNLFGGLGTGGLAVSNN-PNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGN

Q10169 Deubiquitination-protection protein dph11.4e-0953.12Show/hide
Query:  GLGTGGLAVSNNP---NVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNL
        G G GG A    P     PPEE YA QLSQL EMGF D + N++ALR + GNV  A+E LL +L
Subjt:  GLGTGGLAVSNNP---NVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNL

Q9NIF3 Ubiquilin2.0e-0842.86Show/hide
Query:  NLFGGL-GTGGLAVSNNPNV-------PPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLL
        N+FGG+ G GG+  +N+          PPE+ +  QL QL+E+GF D   NI AL +T+GN++ A++RLL
Subjt:  NLFGGL-GTGGLAVSNNPNV-------PPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLL

Q9SII8 Ubiquitin domain-containing protein DSK2b1.4e-2272.86Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        +LMN+FG LG GGL+ +N  NVPPEE YATQL QLQEMGF+D  ENIRAL AT+GNV+AAVERLLG++GQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

Q9SII9 Ubiquitin domain-containing protein DSK2a4.9e-2372.86Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        +LMN+FG LG GGL+ +N PNVPPEE +ATQL QLQEMGF+D  ENIRAL AT+GNV+AAVERLLG++GQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

Arabidopsis top hitse value%identityAlignment
AT2G17190.1 ubiquitin family protein3.5e-2472.86Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        +LMN+FG LG GGL+ +N PNVPPEE +ATQL QLQEMGF+D  ENIRAL AT+GNV+AAVERLLG++GQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ

AT2G17200.1 ubiquitin family protein1.0e-2372.86Show/hide
Query:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ
        +LMN+FG LG GGL+ +N  NVPPEE YATQL QLQEMGF+D  ENIRAL AT+GNV+AAVERLLG++GQ
Subjt:  MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGAACCTGTTTGGTGGGCTCGGTACTGGCGGGTTGGCTGTTTCGAACAATCCCAACGTGCCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGA
GATGGGCTTCTTCGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCTGCTGTCGAACGACTGCTGGGAAATCTCGGGCAGTAA
mRNA sequenceShow/hide mRNA sequence
TTTGGGATAGGGTTAGAGTTGGGTTTTTCTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCGAGATTCTTTTGCTGATCGATCTGCGTTAAAGGGATATGGGTGCCGACGG
TGATTCCAGCGAGCACCGGGTTCATGGTGACGGTGAAGAAGGGGGAGGTAGTGTTACAGTTAATATTCGATGTTCTAATGGTTCGAAATTTTCGGTGAGGACGAGTCTTG
ATTCCTCGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGACGTTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAAACCTTA
GTCAGTTATGGTATGTTAATTCTTTTCTGTTCGGGTTATTATGTGATATAGAATTGTTTTTCTGGAACTCTGTGGACTAAATTTTGGTGGATAATTCTCGTTTTTCTTTG
TTCATTATAATTGAGTTTTTTCCTCAATTTTTTGTTCTCTTTGGAAGGATATGTGAATGTGATTTTTTTGGGTTGTTCTTCAAGTTTTAGTTCATTTATTCCCAAGGAAC
TCCCCTGATTGATTGGATTGTTAGCACCGCCTGATTCATGTCGGCTCTTTGTCTCAAATGTTCCTTTTTTTTGGTACAGGGTTTGGCGTAAGCCAAGTATAGATCCTTTA
CTGGGAATTGCTGGTAAATTCTTTATATTCATATTCTGTTGGGTCTGAGTATAGTTTAATTGAAGGTATCGAGTGTATTGCAACAGCTGCAGACGTTGTGTGTTGGTTTG
TAATGTTTGAATCCAGTATACATTTTGGTTGATGATTCTCTCTTTCCTCGACTTTCTCAAGCTGACAAATTTGTACGATTAGCTTATCGAGGTATATAGTGGGAGCTTTC
GTTTTCCATTCCATTTCTAGTGTTGGAGTTCTTATGTTCATAGCGAAAATTGGCCTGAGTTATACAATACAATCTATTTGTTATTTAGTGGCTATTGTGCGACGTATTAC
ACTGATAAATTGTTCTTAGTATTTGCAAGTTGTCTGTAGACGTGTGCGCGTTTGAAGATCCCTTTAACCTCGTACCATCGACACTCGCATTTTGTGCTGTAGTAATTGGC
ATTGAGAATATGTTTTCTTGTTGACTTGAAATTGTGTTTATATCTTTTTTCCTTTTCGTTTTTGAAGGTTTACAGGCAGATCACACTATTCACATGGTTCGAGGTTTTGC
CCAAGCTTCAGCACCACCTTCTGCACCTGCTTCGAATGTTAATAGTAGAAGTTCTGACACTGCTCCTGGCGTTACAAGAGGTGTTGGTTCTACTGAGAGCGGTGCTTTCG
GAAATGCTGGCCTTGGTGCATCATTATTTCCTGGACTGGGTTTTAATCCTCTTGGTGGCGGTGGAGCTGGACTTCCTGAGTTCGAGCAAGTGCAACAACAGTTGACTCAA
AACCCGAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGAGGACCTTAATTACGAGCAATCCTCAGATGCGGGATAT
TATTGACAGGAACCCAGAGCTTGCTCACATTCTCAATGACCCTGGTATCCTTCGACAGACGTTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACA
CTGACCGAGCTATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACGATGGCTGGA
AATGCTGGGAATGATTCAAGTGCAAACCCATTTGCAGCTCTCTTGTCCAACCAAGGGGGTGCACCAGCGAGGAACGAGTCTAATAATTCTTCAACTACAGGATCAGAAAC
AACAGGAAATGCTGCTCCAAATACAAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCACACGGCCTACTCCAGCTGGTGATGCAAGGGCTCCTGGTATCG
GAGGATTAGGAGTGGCTGGCCGTACAAATGTGGATCCTCTTGCTAGTGTTGTGCCAGACGCGGCTCAGATGAATCAGTTTCTGCAAAATCCAGCTATTTCACAGATGATG
CAAAGCCTGCTCTCCAATCCTCAGTATATGAACCAGATCCTCAATCTGAACCCACAGCTACGGAGCATGGTCGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCC
GGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATTCAGCAAATGCTATCAATTCAGCAGTCACTCCTCTCTACCTTAAATCGACAGCCATCAGCTCAGACCAATGTTT
CTAAGTCACCTAAGTTATAGGTGTTCCTAGCGCTGCTGGATTGGAGATGTTAATGAACCTGTTTGGTGGGCTCGGTACTGGCGGGTTGGCTGTTTCGAACAATCCCAACG
TGCCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGAGATGGGCTTCTTCGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCAT
GCTGCTGTCGAACGACTGCTGGGAAATCTCGGGCAGTAAATCGATAAGATCTTACCTCTTTTCTTTCGAAATTTAATTGGGATTATTTGTCATGTAGTAGTGAAATTTTA
GATCTACAGTCACGAAACAGCAGCTGCACATGCCAGAGAAGAGACACACAGGTTACGTTTTGGAATCTGAATAATTGAAAGTGCCCCATGAGATAGAAATACATAGACTT
TGTGGATATTGTTATGGATCACTATATTAAATTTGCCCCATCTCTCCAAAAAAGACTTGTAAATACATTTTAAACGTTTCAAATTTCGTTGGAACTCGATCGGCAGCAGT
TCTTTTAGTTTCTTTTTATCGAGTTATGGCTTCATTATGCTCATTTTTGTTTCGAGAAAAGATGTTAATTTTGGGTTCAAGTTCGTCAATGAGATTATTT
Protein sequenceShow/hide protein sequence
MLMNLFGGLGTGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ