CuGenDBv2

Gene ID	Carg04149
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box domain-containing protein
Genome location	Carg_Chr19:7926214..7926693
RNA-Seq Expression	Carg04149
Synteny	Carg04149
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

5.8e-85

100

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-86

100

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

3.9e-57

73.91

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLN--RSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LSRLN--RSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

6.8e-86

99.37

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP LSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

4.4e-85

98.74

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSP LSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

TrEMBL top hits

e value

%identity

Alignment

A0A5N6RCK8 F-box domain-containing protein

1.9e-49

73.15

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Query:  KRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLV
        K +   KK KF INDH DILTEILKRLDGPSL  AACVCRLWCA+ARN DSLWEHLCFRHV+SP  SSVRP++LALGGYKRLYM+C+RPVL+RL  S LV
Subjt:  KRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLV

Query:  PRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
         R    +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLCKPVNV
Subjt:  PRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

A0A6J1C339 F-box protein SNE-like

1.9e-57

73.91

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLN--RSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LSRLN--RSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

A0A6J1GK18 F-box protein SNE-like

3.3e-86

99.37

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP LSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

A0A6J1HXD0 F-box protein SNE-like

2.1e-85

98.74

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Query:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV
        MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HVSSP LSSVRPLILALGGYKRLYMLCLRPV
Subjt:  MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPV

Query:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
        LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Subjt:  LSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

A0A6P4BI13 F-box protein SNE

1.6e-48

69.62

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Query:  PQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLN
        PQ +       K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWEHLCFRHVSSP  SSVRP+++ALGGYKRLYM+C+R VLSRL 
Subjt:  PQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLN

Query:  RSGLVPRVRTLQDQVQRLSLSLFCVDYYER----NGWLGGDAAAAAPSLRFLCKPVNV
         S LV RV T  D+VQ LSLSLFCVDYYER    +G LGG  A+A+ SL FLCKPVNV
Subjt:  RSGLVPRVRTLQDQVQRLSLSLFCVDYYER----NGWLGGDAAAAAPSLRFLCKPVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.6e-11

38.6

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Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLS--SVRPLILALGGYKRLYMLCLRPVLSR-----LNRSGLVPRVRTLQDQV
        D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +R ++L+LGG++RL+ + +RP+  R       +    P VR  +DQV
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLS--SVRPLILALGGYKRLYMLCLRPVLSR-----LNRSGLVPRVRTLQDQV

Query:  QRLSLSLFCVDYYE
        Q LSLSLF + +++
Subjt:  QRLSLSLFCVDYYE

Q9LUB6 F-box protein SNE

1.0e-36

55.77

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Query:  QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR
        + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS     S+R ++ ALGGY+ LY LC+RPVL+RL  
Subjt:  QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR

Query:  SGLVPRVRTLQDQVQRLSLSLFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV
            P++   +DQ+Q LSLSL+CV YYER     WLG    A   SL FL KPVNV
Subjt:  SGLVPRVRTLQDQVQRLSLSLFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV

Q9STX3 F-box protein GID2

2.6e-11

35.77

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Query:  GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLR
        GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R ++LALGG++RL+ L L 
Subjt:  GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLR

Query:  PVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYER
        P LS+ N     PR R  +D++ +L+LSL  + YYE+
Subjt:  PVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.8e-12

35.77

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Query:  GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLR
        GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + +R ++LALGG++RL+ L L 
Subjt:  GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRL--SSVRPLILALGGYKRLYMLCLR

Query:  PVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYER
        P LS+ N     PR R  +D++ +L+LSL  + YYE+
Subjt:  PVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYER

AT5G48170.1 F-box family protein

7.4e-38

55.77

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Query:  QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR
        + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR VS     S+R ++ ALGGY+ LY LC+RPVL+RL  
Subjt:  QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNR

Query:  SGLVPRVRTLQDQVQRLSLSLFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV
            P++   +DQ+Q LSLSL+CV YYER     WLG    A   SL FL KPVNV
Subjt:  SGLVPRVRTLQDQVQRLSLSLFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV

Sequences

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CDS sequence

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ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACT
CGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCGCTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTC
CGCGTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTC
CCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGC
TCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

mRNA sequence

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Protein sequence

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MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLV
PRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV

Carg04149 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome