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Carg04168 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04168
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionfimbrin-5-like
Genome locationCarg_Chr19:8019476..8020052
RNA-Seq ExpressionCarg04168
SyntenyCarg04168
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0051639 - actin filament network formation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005884 - actin filament (cellular component)
GO:0032432 - actin filament bundle (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR036872 - CH domain superfamily
IPR039959 - Fimbrin/Plastin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572252.1 Fimbrin-5, partial [Cucurbita argyrosperma subsp. sororia]7.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
KAG7011883.1 Fimbrin-5, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-59100Show/hide
Query:  MASLLNFFIRGAKVFCGDGSDSCLTVKMSNCRRRQEAERDCARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLA
        MASLLNFFIRGAKVFCGDGSDSCLTVKMSNCRRRQEAERDCARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLA
Subjt:  MASLLNFFIRGAKVFCGDGSDSCLTVKMSNCRRRQEAERDCARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLA

Query:  AQTCALAMENCWILFQIIA
        AQTCALAMENCWILFQIIA
Subjt:  AQTCALAMENCWILFQIIA
XP_022952555.1 fimbrin-5-like [Cucurbita moschata]7.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
XP_022969017.1 fimbrin-5-like [Cucurbita maxima]7.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
XP_023554424.1 fimbrin-5 [Cucurbita pepo subsp. pepo]7.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
TrEMBL top hitse value%identityAlignment
A0A0A0K1W9 Uncharacterized protein4.8e-1363.29Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+  T     GT  SLA QT +LA+E+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
A0A1S4E0J8 fimbrin-51.3e-1365.82Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GT  SLA QT A AME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
A0A5A7V024 Fimbrin-51.3e-1365.82Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GT  SLA QT A AME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
A0A6J1GKY6 fimbrin-5-like3.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
A0A6J1HV69 fimbrin-5-like3.8e-1872.15Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
        ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ+  E           S+A T     GTGSSLAAQTCALAME+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEG----------SEAVTSKRRHGTGSSLAAQTCALAMEN
SwissProt top hitse value%identityAlignment
O50064 Fimbrin-21.2e-1086.49Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ
        ARKLGCS+FLLPEDIIEVNQKM+L LTASIMYW+L Q
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ
Q7G188 Fimbrin-11.3e-1263.33Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
        ARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL +   E S++ +++    T +S A+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
Q9FJ70 Fimbrin-31.3e-1261.29Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQT
        ARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL Q+ +    + +S     T S+    T
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQT
Q9FKI0 Fimbrin-56.6e-1255.88Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQTCALAME
        ARKLGCS+FLLPEDIIEVNQKM+LIL ASIMYWSL Q+    S         G  +S+A +   L+++
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQTCALAME
Q9SJ84 Fimbrin-41.8e-0978.95Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQK
        ARKLGCS+FLLPEDI+EVNQ+M+LIL ASIM WSL Q+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQK
Arabidopsis top hitse value%identityAlignment
AT4G26700.1 fimbrin 19.5e-1463.33Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
        ARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL +   E S++ +++    T +S A+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
AT4G26700.2 fimbrin 19.5e-1463.33Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
        ARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL +   E S++ +++    T +S A+
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAA
AT5G35700.1 fimbrin-like protein 24.7e-1355.88Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQTCALAME
        ARKLGCS+FLLPEDIIEVNQKM+LIL ASIMYWSL Q+    S         G  +S+A +   L+++
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQTCALAME
AT5G48460.1 Actin binding Calponin homology (CH) domain-containing protein8.9e-1286.49Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ
        ARKLGCS+FLLPEDIIEVNQKM+L LTASIMYW+L Q
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQ
AT5G55400.1 Actin binding Calponin homology (CH) domain-containing protein9.5e-1461.29Show/hide
Query:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQT
        ARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL Q+ +    + +S     T S+    T
Subjt:  ARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTCTTCTCAACTTCTTCATTCGTGGAGCCAAGGTGTTTTGCGGGGACGGGTCGGATAGCTGTCTTACCGTAAAAATGTCAAATTGCAGACGAAGACAAGAAGC
TGAACGCGACTGTGCTCGAAAGCTCGGCTGCTCCCTTTTCTTGCTCCCTGAAGATATTATTGAAGTGAACCAAAAGATGATCCTTATACTGACTGCTAGCATCATGTACT
GGAGCCTGCTGCAGAAAAAAGCAGAGGGGTCTGAAGCTGTTACCAGCAAACGCAGGCACGGGACGGGATCATCCTTGGCTGCCCAGACATGTGCTTTGGCAATGGAGAAC
TGCTGGATATTGTTTCAAATAATTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTCTTCTCAACTTCTTCATTCGTGGAGCCAAGGTGTTTTGCGGGGACGGGTCGGATAGCTGTCTTACCGTAAAAATGTCAAATTGCAGACGAAGACAAGAAGC
TGAACGCGACTGTGCTCGAAAGCTCGGCTGCTCCCTTTTCTTGCTCCCTGAAGATATTATTGAAGTGAACCAAAAGATGATCCTTATACTGACTGCTAGCATCATGTACT
GGAGCCTGCTGCAGAAAAAAGCAGAGGGGTCTGAAGCTGTTACCAGCAAACGCAGGCACGGGACGGGATCATCCTTGGCTGCCCAGACATGTGCTTTGGCAATGGAGAAC
TGCTGGATATTGTTTCAAATAATTGCATAG
Protein sequenceShow/hide protein sequence
MASLLNFFIRGAKVFCGDGSDSCLTVKMSNCRRRQEAERDCARKLGCSLFLLPEDIIEVNQKMILILTASIMYWSLLQKKAEGSEAVTSKRRHGTGSSLAAQTCALAMEN
CWILFQIIA