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Carg04238 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04238
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAspartate racemase
Genome locationCarg_Chr01:606751..608011
RNA-Seq ExpressionCarg04238
SyntenyCarg04238
Gene Ontology termsGO:0047661 - amino-acid racemase activity (molecular function)
InterPro domainsIPR004380 - Aspartate racemase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152211.1 uncharacterized protein LOC101217164 [Cucumis sativus]1.2e-1736.89Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SHPV    SED  LDS  VVE+LK+                  + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++D+LP D PLL++CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ AE
Subjt:  WAQSAE

XP_008454251.1 PREDICTED: probable amino-acid racemase [Cucumis melo]6.9e-1839.32Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLK---TLLG------LVM-----YLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SHPV    SED  LDS  VVE+LK   T L       +VM     +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLK---TLLG------LVM-----YLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++D+LP D PLLK+CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ AE
Subjt:  WAQSAE

XP_022153634.1 uncharacterized protein LOC111021093 [Momordica charantia]8.7e-2139.81Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTTD------
        +L V   +SHPV    S D  LDSG VVE+LK                   + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG          
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTTD------

Query:  ------------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
                                                                    R +++VIL SDDMRDLLPRD PLLKKCI+P++A A STIN
Subjt:  ------------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQSAE
Subjt:  WAQSAE

XP_023524613.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111788510 [Cucurbita pepo subsp. pepo]1.1e-2349.4Show/hide
Query:  MSEDSLDSGAVVETLKTLLG--LVMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTT-----------------------------------
        MSEDSLDSGAVVETLK  +    V +L Y DVSRGCPVTFLHMPDCVAR LKEAKLKLLEAG +                                    
Subjt:  MSEDSLDSGAVVETLKTLLG--LVMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTT-----------------------------------

Query:  ----------------------------DRRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTI
                                       LSTVILVSD MRDLLPRD+PLLKKCINPINA A STI
Subjt:  ----------------------------DRRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTI

XP_038892083.1 broad specificity amino-acid racemase RacX [Benincasa hispida]1.8e-1837.86Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SHPV    SED  LDS  VVE+LK+                  + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++DLLP D PLLK+CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ AE
Subjt:  WAQSAE

TrEMBL top hitse value%identityAlignment
A0A0A0KVD7 Uncharacterized protein5.7e-1836.89Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SHPV    SED  LDS  VVE+LK+                  + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++D+LP D PLL++CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ AE
Subjt:  WAQSAE

A0A1S4E0P1 probable amino-acid racemase3.3e-1839.32Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLK---TLLG------LVM-----YLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SHPV    SED  LDS  VVE+LK   T L       +VM     +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLK---TLLG------LVM-----YLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++D+LP D PLLK+CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ AE
Subjt:  WAQSAE

A0A6J1DHC6 uncharacterized protein LOC1110210934.2e-2139.81Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTTD------
        +L V   +SHPV    S D  LDSG VVE+LK                   + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG          
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTTD------

Query:  ------------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
                                                                    R +++VIL SDDMRDLLPRD PLLKKCI+P++A A STIN
Subjt:  ------------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQSAE
Subjt:  WAQSAE

A0A6J1GXT9 uncharacterized protein LOC1114578299.7e-1836.89Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SH V    SE+  LDSG +VE+LK+   L              + +L Y DVS+GCPVTFLHM DCVAR LKEAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++DLLP D PLLK+CI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ A+
Subjt:  WAQSAE

A0A6J1IUZ5 uncharacterized protein LOC1114795497.4e-1836.89Show/hide
Query:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +L V   +SH V    SED  LDSG +VE+LK+                  + +L Y DVS+GCPVTFLHM DCVAR L+EAKLK LEAG         T
Subjt:  QLLVMSSNSHPVYCCMSED-SLDSGAVVETLKTLLGL--------------VMYLIY-DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
        +                                                           R +++VIL SDD++DLLP D PLLKKCI+P++A A STIN
Subjt:  D-----------------------------------------------------------RRLSTVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQSAE
        WAQ A+
Subjt:  WAQSAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15410.1 aspartate-glutamate racemase family9.6e-1026.96Show/hide
Query:  QLLVMSSNSHP-VYCCMSEDSLDSGAVVETLKT-----------LLGLVMYLIY----DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT
        +LL+   NS+P +Y       +D   +VE L+            L+ +  ++ +    +V  G  V  LHM +C+A+ L+EAK+K LEAG         T
Subjt:  QLLVMSSNSHP-VYCCMSEDSLDSGAVVETLKT-----------LLGLVMYLIY----DVSRGCPVTFLHMPDCVARHLKEAKLKLLEAG-------FTT

Query:  DRRLS-----------------------------------------------------------TVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN
           LS                                                            V+L SD+MRDLLP D PLLKKC++P++A A S I 
Subjt:  DRRLS-----------------------------------------------------------TVILVSDDMRDLLPRDSPLLKKCINPINASASSTIN

Query:  WAQS
        WA++
Subjt:  WAQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTGACCTTCCTTCTGTTCTTTGCTGTGACCCAACTTTTAGTAATGAGCTCTAATTCTCACCCAGTTTACTGCTGCATGAGTGAGGATAGCCTGGACTCTGG
AGCTGTAGTGGAGACTTTGAAGACTTTGTTAGGCCTTGTTATGTATCTCATTTATGATGTTTCAAGAGGGTGTCCTGTTACCTTCCTTCACATGCCTGATTGTGTTGCTA
GACACCTCAAGGAAGCTAAGTTGAAGCTACTTGAAGCTGGGTTCACTACGGATAGGAGGCTGTCAACTGTCATCCTTGTCTCTGATGATATGCGAGATCTTTTGCCTCGG
GATTCTCCCCTTCTTAAGAAATGCATCAACCCTATAAATGCATCAGCAAGTTCCACTATCAATTGGGCACAATCTGCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTGACCTTCCTTCTGTTCTTTGCTGTGACCCAACTTTTAGTAATGAGCTCTAATTCTCACCCAGTTTACTGCTGCATGAGTGAGGATAGCCTGGACTCTGG
AGCTGTAGTGGAGACTTTGAAGACTTTGTTAGGCCTTGTTATGTATCTCATTTATGATGTTTCAAGAGGGTGTCCTGTTACCTTCCTTCACATGCCTGATTGTGTTGCTA
GACACCTCAAGGAAGCTAAGTTGAAGCTACTTGAAGCTGGGTTCACTACGGATAGGAGGCTGTCAACTGTCATCCTTGTCTCTGATGATATGCGAGATCTTTTGCCTCGG
GATTCTCCCCTTCTTAAGAAATGCATCAACCCTATAAATGCATCAGCAAGTTCCACTATCAATTGGGCACAATCTGCTGAATAA
Protein sequenceShow/hide protein sequence
MENLTFLLFFAVTQLLVMSSNSHPVYCCMSEDSLDSGAVVETLKTLLGLVMYLIYDVSRGCPVTFLHMPDCVARHLKEAKLKLLEAGFTTDRRLSTVILVSDDMRDLLPR
DSPLLKKCINPINASASSTINWAQSAE