; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04239 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04239
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger (Ran-binding) family protein
Genome locationCarg_Chr01:602849..604138
RNA-Seq ExpressionCarg04239
SyntenyCarg04239
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036500.1 hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-97100Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS
        FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS

XP_022948549.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata]3.8e-9099.39Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

XP_022948551.1 TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]3.8e-9099.39Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

XP_022998918.1 TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]1.1e-8998.77Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

XP_023525213.1 transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pepo]5.3e-92100Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

TrEMBL top hitse value%identityAlignment
A0A6J1DJ84 TATA-binding protein-associated factor 2N-like8.4e-7585.89Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRD CQRCGDPKS  GG DFG L+NGGGRGGS FGYGGSDVRPGDWYC++GNCGAHNFASRSSCFKCGAFKDDM    GGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FD+PRSRG S FGFAN    A  RTGASAWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

A0A6J1G9I4 TATA-binding protein-associated factor 2N isoform X31.9e-9099.39Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

A0A6J1GA82 periodic tryptophan protein 2 isoform X21.9e-9099.39Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

A0A6J1K9C2 periodic tryptophan protein 2 isoform X25.4e-9098.77Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

A0A6J1KI51 TATA-binding protein-associated factor 2N isoform X35.4e-9098.77Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFD

Query:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
        FDMPRSRGLSPFGFANP AAAAARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Subjt:  FDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.0e-0531.65Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDP-----KSGGGGCDFGALL---NGGGRGGSGF--GYGGS-----------------------------------
        RPGDWNC  C   NFQRR  C RC  P      +  G   F       N  G G S F   YGGS                                   
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDP-----KSGGGGCDFGALL---NGGGRGGSGF--GYGGS-----------------------------------

Query:  DVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA
          R GDW C    CG HNFA    C +CGA +   +  A
Subjt:  DVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA

Q27294 RNA-binding protein cabeza7.4e-0443.84Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHN
        R GDW C SC + NF  R+ C RC  PK    G D G+   GGG G  G G GG   R  D     G  G HN
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHN

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein3.4e-0427.71Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKC
        + GDW C++C  LNF +   C RC D  +                           + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKC

AT2G17975.1 zinc finger (Ran-binding) family protein6.0e-0926.39Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GCDFGALLNGGGRGGSGFGYGGS---------------DVRPGDWYCSIGNCGAHNFAS
        + R GDW C  C + N+  R+ C++CG  K           G      L+   RG       GS               + R GDW C    CG HN++S
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GCDFGALLNGGGRGGSGFGYGGS---------------DVRPGDWYCSIGNCGAHNFAS

Query:  RSSCFKCGAF------KDDMSAAAGGFDFDMPRSR-----------------GLS---------PFGFANP-AAAAAARTGASAWKSGDWICARSGCNEH
        R  C KC            +++ A   ++D  R                   G+S         P  F    +  A    G   W+ GDW+C  + C  H
Subjt:  RSSCFKCGAF------KDDMSAAAGGFDFDMPRSR-----------------GLS---------PFGFANP-AAAAAARTGASAWKSGDWICARSGCNEH

Query:  NFASRMECFRCSAPKD
        N+ASR EC RC   +D
Subjt:  NFASRMECFRCSAPKD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein5.8e-2839.49Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMP
        GDW C +CQH NF++R+ CQ+CG PK GG                S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +           
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMP

Query:  RSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD
        +  G     + N  AA         WK+GDW+C R GC  HN+ASR ECF+C   +D
Subjt:  RSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein4.7e-5463.01Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA
        MSRPGDWNCRSC HLNFQRRD CQRCGD +SG    GG DFG   N GGR  S FG+  GSDVRPGDWYC++GNCG HNFASRS+CFKCG FKD+  A  
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---GGCDFGALLNGGGRGGSGFGY-GGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAA

Query:  GG--------FDFDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD
        GG        FD D+ RSR                  G S+WKSGDWIC R GCNEHNFASRMECFRC+AP+D
Subjt:  GG--------FDFDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein9.2e-5061.54Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS----
        M+RPGDWNCR C HLNFQRRD CQRC +P+ GG   D   LL+G GGR   S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S    
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNG-GGRG-GSGFGYG-GSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS----

Query:  -AAAGGFDFDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD
         A  G  D ++   RGL  FGF   +++    TG S WKSGDWIC RSGCNEHNFASR ECFRC+APK+
Subjt:  -AAAGGFDFDMPRSRGLSPFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGA
TTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGTCTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCC
ACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGGGCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCC
CCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTT
TGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAAAAGACTCGTATGCTTCGAAGAGAGCAAATTTGAAAGAGACTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATACCCATTCTTCTTTCTTTCTGTTTTAACCCCAACCATTCCCCTTTCACTTAAGAGAGAAGAGGAGAGAAAATGAGCAGACCGGGAGACTGGAACTGCAGGTCATGCCA
GCACCTCAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGGGACCCCAAGTCCGGCGGCGGTGGATGTGATTTTGGAGCTCTGTTAAACGGCGGCGGAAGAGGCGGGT
CTGGATTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTATTGCAGCATAGGGAACTGTGGAGCCCACAACTTCGCAAGCAGGTCGAGCTGCTTCAAATGTGGG
GCGTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGATATGCCGCGCTCTAGAGGACTGTCCCCTTTTGGTTTTGCCAATCCCGCCGCCGCCGCCGCCGC
CCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGCGCCAGGTCGGGATGCAATGAACATAACTTTGCGAGTAGGATGGAATGCTTTAGATGCAGTGCTCCAA
AAGACTCGTATGCTTCGAAGAGAGCAAATTTGAAAGAGACTTCATAGCCAGCACTAGCCTTCTTCTTCTTTCTTTTAGTTTCTTTAGTTTTCTTATTATTATTATTTTTT
GTAACTTTTATCTTTTCTGGATGATGCTATTTCAGTGATAAAAAATTGAGATATTATC
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLS
PFGFANPAAAAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSYASKRANLKETS