; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04264 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04264
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationCarg_Chr01:498200..498892
RNA-Seq ExpressionCarg04264
SyntenyCarg04264
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]4.3e-7196.53Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGG+TLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022949150.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]3.5e-7399.31Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASL TLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022998077.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima]1.2e-73100Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_023523631.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo]4.6e-7399.31Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYF+LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_038902740.1 photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]1.5e-7196.53Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+L+PKN+KAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGG+TLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein2.1e-7196.53Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGG+TLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GBZ1 photosystem I reaction center subunit VI, chloroplastic-like1.7e-7399.31Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASL TLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like1.3e-7095.14Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+  PK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGG+TLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.3e-7095.14Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+  PK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGG+TLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1K6V8 photosystem I reaction center subunit VI, chloroplastic-like5.9e-74100Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic3.8e-5476.92Show/hide
Query:  LATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTL--TPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGL
        +A+L AVQPVAVKGL GSS++G KL +RPS + L  T +  +A AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGL
Subjt:  LATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTL--TPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGL

Query:  LLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLKFLLLGGGS +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic7.9e-6080.69Show/hide
Query:  MASLATLAAVQPV-AVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGLGGSSL G KL ++PSRQ+  PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPV-AVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGGS L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic7.2e-6179.17Show/hide
Query:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  +KGL GSS+AGTKL ++P+RQ+    N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGGS L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic6.1e-6080.69Show/hide
Query:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGGS L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic2.3e-5978.62Show/hide
Query:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGGS L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H24.3e-6180.69Show/hide
Query:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGGS L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-11.6e-6078.62Show/hide
Query:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGGS L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCCCTCAGGCCCTCTCGCCAGACCTT
GACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTGATTTAGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTCGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGT
GGTTCCACTTTAGCTTACTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCACGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
TATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGT
GGAAGCTCCCTTGCCGGGACCAAGCTGCCCCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGT
TTACTTTGATTTAGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTCGAGACCTTTG
CTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGTGGTTCCACTTTAGCTTACTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAG
AAAGGACCTCAACTTCCACCCAAACTCGGGCCACGTGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI