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Carg04327 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04327
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUbiquitin-like protein ATG12
Genome locationCarg_Chr01:155555..156687
RNA-Seq ExpressionCarg04327
SyntenyCarg04327
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0006501 - C-terminal protein lipidation (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0034045 - phagophore assembly site membrane (cellular component)
GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domainsIPR007242 - Ubiquitin-like protein Atg12
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606694.1 Ubiquitin-like protein ATG12A, partial [Cucurbita argyrosperma subsp. sororia]2.2e-44100Show/hide
Query:  MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
Subjt:  MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]5.0e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]5.0e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

XP_022980759.1 ubiquitin-like protein ATG12 [Cucurbita maxima]5.0e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]5.0e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

TrEMBL top hitse value%identityAlignment
A0A0A0LIA6 Ubiquitin-like protein ATG122.4e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

A0A1S3CKI1 Ubiquitin-like protein ATG122.4e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

A0A2P5AH35 Ubiquitin-like protein ATG125.4e-0963.83Show/hide
Query:  KDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +D L+D FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Subjt:  KDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG122.4e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

A0A6J1J054 Ubiquitin-like protein ATG122.4e-0975.61Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

SwissProt top hitse value%identityAlignment
A2YAG8 Ubiquitin-like protein ATG121.2e-0863.41Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        VF++VN A S  PD  +IDLYNNFGIDG+LVV +  S+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

Q1SF86 Ubiquitin-like protein ATG121.1e-0965.85Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FV+VN A S  PD  +IDLYNNFG DGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

Q69NP0 Ubiquitin-like protein ATG121.2e-0863.41Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        VF++VN A S  PD  +IDLYNNFGIDG+LVV +  S+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

Q8S924 Ubiquitin-like protein ATG12A6.2e-1065.85Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

Q9LVK3 Ubiquitin-like protein ATG12B6.2e-1065.85Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

Arabidopsis top hitse value%identityAlignment
AT1G54210.1 Ubiquitin-like superfamily protein4.4e-1165.85Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG

AT3G13970.1 Ubiquitin-like superfamily protein4.4e-1165.85Show/hide
Query:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
        +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Subjt:  VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCCAAACAAGATCTTCCGATCCAAGTCGGAGATTGTACCCCAGACGGAGGGGTGGCAGTTCCATTCCAGCCGTCCACGACGGGGCAAAATGATGGCTTCAAC
GGAATCTTCTATTTCTACTCGGAAAGATGAGCTTCTTGACGTTTTTGTGTTTGTCAACTGTGCACTCTCAACAGGTCCAGATGCGACACTTATTGATTTATATAATAACT
TTGGAATTGATGGGAAGTTGGTGGTATATTTTACCTGCTCCATTGCTTGGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCCAAACAAGATCTTCCGATCCAAGTCGGAGATTGTACCCCAGACGGAGGGGTGGCAGTTCCATTCCAGCCGTCCACGACGGGGCAAAATGATGGCTTCAAC
GGAATCTTCTATTTCTACTCGGAAAGATGAGCTTCTTGACGTTTTTGTGTTTGTCAACTGTGCACTCTCAACAGGTCCAGATGCGACACTTATTGATTTATATAATAACT
TTGGAATTGATGGGAAGTTGGTGGTATATTTTACCTGCTCCATTGCTTGGGGCTAATGTGCAGTCTG
Protein sequenceShow/hide protein sequence
MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG