; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04390 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04390
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE6-like
Genome locationCarg_Chr04:20690853..20691802
RNA-Seq ExpressionCarg04390
SyntenyCarg04390
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033162.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-64100Show/hide
Query:  MWDTPNPNNPQHLFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD
        MWDTPNPNNPQHLFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD
Subjt:  MWDTPNPNNPQHLFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVD

Query:  DLSERLSQLLSTIDADSAEAAIIRSLIMQ
        DLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  DLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_004151201.2 transcription factor PRE6 [Cucumis sativus]3.4e-3592.31Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]2.4e-3694.51Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022952488.1 transcription factor PRE6-like, partial [Cucurbita moschata]3.3e-5498.29Show/hide
Query:  LFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST
        LFITLITSPP PFNPNFFSHQLNTHT+STRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST
Subjt:  LFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST

Query:  IDADSAEAAIIRSLIMQ
        IDADSAEAAIIRSLIMQ
Subjt:  IDADSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]3.0e-39100Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator1.6e-3592.31Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE61.6e-3592.31Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE61.6e-3592.31Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ  ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE61.1e-3694.51Show/hide
Query:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS+RRSRQ G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1GKQ6 transcription factor PRE6-like1.6e-5498.29Show/hide
Query:  LFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST
        LFITLITSPP PFNPNFFSHQLNTHT+STRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST
Subjt:  LFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLST

Query:  IDADSAEAAIIRSLIMQ
        IDADSAEAAIIRSLIMQ
Subjt:  IDADSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.1e-2567.39Show/hide
Query:  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+R  RSRQ G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q0DUR2 Transcription factor ILI61.1e-2567.39Show/hide
Query:  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS+R  RSRQ G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSTR--RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q8GW32 Transcription factor PRE64.0e-3177.17Show/hide
Query:  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        MS+R   RSRQ G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Q9FLE9 Transcription factor PRE12.7e-2772.83Show/hide
Query:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS RRSRQ   A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE52.5e-2875Show/hide
Query:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS RRSRQ   ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.9e-3277.17Show/hide
Query:  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        MS+R   RSRQ G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSTR---RSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.4e-2567.37Show/hide
Query:  MSTRRSR---QPGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        MS RRSR     G SRIS+DQI +LI KL+ L+PE+R  RRSDKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Subjt:  MSTRRSR---QPGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-2975Show/hide
Query:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS RRSRQ   ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

AT5G15160.1 BANQUO 24.0e-2671.11Show/hide
Query:  STRRSRQ-PGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        S+RRSRQ   +SRISDDQI +LISKLR  +PEIR +RRS+ VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  STRRSRQ-PGASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.9e-2872.83Show/hide
Query:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        MS RRSRQ   A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSTRRSRQ-PGASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGACACTCCCAATCCCAATAATCCTCAACACCTCTTTATAACTCTTATCACTTCCCCTCCCTTCCCCTTCAACCCCAACTTCTTCTCTCATCAACTCAACACTCA
CACCATGTCTACCCGGAGATCAAGGCAGCCTGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGAGATTCGCCATC
GCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAACTCTTG
TCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
TAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACACCTCTTTATAACTCTTATCACTTCCCCTCCCTTCCCCTTCAACCCCAACTTCTTCTCTCATCAA
CTCAACACTCACACCATGTCTACCCGGAGATCAAGGCAGCCTGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTCGTCCCCGA
GATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCT
CTCAACTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACCAGAACAAGAACAAGGCAGTTGGG
TTTGGTAATGCTATATATATATATATATAAATATATA
Protein sequenceShow/hide protein sequence
MWDTPNPNNPQHLFITLITSPPFPFNPNFFSHQLNTHTMSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLL
STIDADSAEAAIIRSLIMQ