; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04413 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04413
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZnMc domain-containing protein
Genome locationCarg_Chr04:20513954..20514642
RNA-Seq ExpressionCarg04413
SyntenyCarg04413
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030198 - extracellular matrix organization (biological process)
GO:0030574 - collagen catabolic process (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001818 - Peptidase M10, metallopeptidase
IPR024079 - Metallopeptidase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602462.1 Metalloendoproteinase 2-MMP, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0486.21Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYITNVQK SNAMDHDDTFD A +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
KAG7033140.1 Stromelysin-1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-32100Show/hide
Query:  MYLQRFGYITNVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTDCTPSGAST
        MYLQRFGYITNVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTDCTPSGAST
Subjt:  MYLQRFGYITNVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTDCTPSGAST
XP_022962668.1 metalloendoproteinase 2-MMP-like [Cucurbita moschata]1.3e-0486.21Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYITNVQK SNAMDHDDTFD A +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
XP_022991021.1 metalloendoproteinase 2-MMP-like [Cucurbita maxima]1.3e-0482.76Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYI+NVQKHSNAMDHDDTFD   +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
XP_023552591.1 metalloendoproteinase 5-MMP-like [Cucurbita pepo subsp. pepo]1.5e-0589.66Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYITNVQKHSNAMDHDDTFD A +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
TrEMBL top hitse value%identityAlignment
A0A6J1BXD5 metalloendoproteinase 2-MMP-like3.1e-0458.7Show/hide
Query:  SNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
        S+  DH     K AD+ ISFE +EHGD   F+GAG ILAHA+PPTD
Subjt:  SNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
A0A6J1HFG1 metalloendoproteinase 2-MMP-like6.2e-0586.21Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYITNVQK SNAMDHDDTFD A +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
A0A6J1JPK1 metalloendoproteinase 2-MMP-like6.2e-0582.76Show/hide
Query:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
        YLQRFGYI+NVQKHSNAMDHDDTFD   +
Subjt:  YLQRFGYITNVQKHSNAMDHDDTFDKAAD
A0A6S7NKS7 ZnMc domain-containing protein3.1e-0462.86Show/hide
Query:  KAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
        + AD+ ISFE+ +HGD  PFNG+G++LAHAFPP D
Subjt:  KAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
A0A6S7PL12 ZnMc domain-containing protein1.1e-0452.83Show/hide
Query:  KHSNAMDHDDTFDKA-----ADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
        K + A     TF +A     AD+ ISFE+ +HGD  PFNG+G++LAHAFPPTD
Subjt:  KHSNAMDHDDTFDKA-----ADMNISFEKQEHGDIDPFNGAGKILAHAFPPTD
SwissProt top hitse value%identityAlignment
P23097 Collagenase 3 (Fragment)2.9e-0458.82Show/hide
Query:  DKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
        D  AD+ ISF  +EHGD  PF+G   +LAHAFPP
Subjt:  DKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
P33435 Collagenase 31.3e-0457.14Show/hide
Query:  FDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
        +D  AD+ ISF  +EHGD  PF+G   +LAHAFPP
Subjt:  FDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
Q10835 Collagenase 3 (Fragment)3.9e-0461.29Show/hide
Query:  ADMNISFEKQEHGDIDPFNGAGKILAHAFPP
        AD+ +SF K+EHGD  PF+G   +LAHAFPP
Subjt:  ADMNISFEKQEHGDIDPFNGAGKILAHAFPP
Q28397 Stromelysin-15.9e-0554.29Show/hide
Query:  FDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
        ++  AD+ I+F  +EHGD  PF+G GK+LAHA+PP
Subjt:  FDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
Q6Y4Q5 Stromelysin-13.5e-0542.86Show/hide
Query:  NVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
        NV K    +    T +  AD+ ISF  ++HGD +PF+G G +L HA+PP
Subjt:  NVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCTTCAACGCTTTGGTTACATTACCAATGTCCAAAAACACTCCAACGCCATGGATCATGATGACACCTTTGATAAAGCAGCTGATATGAACATAAGCTTTGAAAA
ACAAGAGCATGGAGATATTGATCCGTTTAATGGTGCGGGAAAAATTTTGGCCCATGCTTTTCCACCCACGGATTGTACTCCTTCTGGGGCTTCAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCTTCAACGCTTTGGTTACATTACCAATGTCCAAAAACACTCCAACGCCATGGATCATGATGACACCTTTGATAAAGCAGCTGATATGAACATAAGCTTTGAAAA
ACAAGAGCATGGAGATATTGATCCGTTTAATGGTGCGGGAAAAATTTTGGCCCATGCTTTTCCACCCACGGATTGTACTCCTTCTGGGGCTTCAACATAG
Protein sequenceShow/hide protein sequence
MYLQRFGYITNVQKHSNAMDHDDTFDKAADMNISFEKQEHGDIDPFNGAGKILAHAFPPTDCTPSGAST