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Carg04418 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04418
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase
Genome locationCarg_Chr04:20483817..20484368
RNA-Seq ExpressionCarg04418
SyntenyCarg04418
Gene Ontology termsNA
InterPro domainsIPR009097 - Cyclic phosphodiesterase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142350.1 uncharacterized protein LOC101208638 [Cucumis sativus]1.0e-9396.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

XP_022964210.1 uncharacterized protein LOC111464296 [Cucurbita moschata]5.8e-97100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

XP_022989855.1 uncharacterized protein LOC111486920 [Cucurbita maxima]1.3e-9699.45Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIETGEEYRLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

XP_022993671.1 uncharacterized protein LOC111489594 [Cucurbita maxima]1.0e-9396.17Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSL+SIGSLP+DNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIE GEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

XP_038890563.1 uncharacterized protein LOC120080080 [Benincasa hispida]1.0e-9396.17Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPLPLSL+SIGSLP+D+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLC+AMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

TrEMBL top hitse value%identityAlignment
A0A0A0KVB2 Uncharacterized protein5.0e-9496.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

A0A5A7T7Y4 RNA ligase/cyclic nucleotide phosphodiesterase5.0e-9496.72Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESIVKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

A0A6J1HK74 uncharacterized protein LOC1114642962.8e-97100Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

A0A6J1JNI6 uncharacterized protein LOC1114869206.3e-9799.45Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIETGEEYRLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

A0A6J1JWZ6 uncharacterized protein LOC1114895945.0e-9496.17Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSL+SIGSLP+DNN+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        FQSQLCEAMRKEGIE GEEYR GSWIPHCAVAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT+EA
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.4e-6969.57Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
        Q Q QLCE ++KEG E GEEYR+ SW+P C+VA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN LE+
Subjt:  QFQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA

AT3G28140.2 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.2e-5264.71Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL
        Q Q QLCE ++KEG E GEEYR+ SW+P C+VA +VPK+R++E F V     L
Subjt:  QFQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKL

AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.1e-7469.95Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ
        MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES++KNF SKQEP+ +S ++IGS  +DNN+LFL P PS+SLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
         Q+QLC+ ++KE ++ GEEYR+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNTLE+
Subjt:  FQSQLCEAMRKEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGA
AATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGT
CCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGG
AAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCT
AAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAAGGTTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGA
AATTGAATCGCGCCCTCACATTACCCTATTTTCCAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTCTGCCTTTGT
CCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGG
AAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCCTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCT
AAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTCGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTT
GA
Protein sequenceShow/hide protein sequence
MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMR
KEGIETGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA