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Carg04506 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04506
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGeranylgeranyl transferase type I subunit beta
Genome locationCarg_Chr04:20100997..20102457
RNA-Seq ExpressionCarg04506
SyntenyCarg04506
Gene Ontology termsGO:0009414 - response to water deprivation (biological process)
GO:0009733 - response to auxin (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0018344 - protein geranylgeranylation (biological process)
GO:0005953 - CAAX-protein geranylgeranyltransferase complex (cellular component)
GO:0004662 - CAAX-protein geranylgeranyltransferase activity (molecular function)
InterPro domainsIPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602367.1 Geranylgeranyl transferase type-1 subunit beta, partial [Cucurbita argyrosperma subsp. sororia]1.5e-8098.73Show/hide
Query:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
        MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
Subjt:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR

Query:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

KAG7033047.1 Geranylgeranyl transferase type-1 subunit beta [Cucurbita argyrosperma subsp. argyrosperma]7.1e-83100Show/hide
Query:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
        MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
Subjt:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR

Query:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
        SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
Subjt:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

XP_022922585.1 geranylgeranyl transferase type-1 subunit beta [Cucurbita moschata]7.3e-8098.1Show/hide
Query:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
        MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLP QYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
Subjt:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR

Query:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

XP_022990858.1 geranylgeranyl transferase type-1 subunit beta [Cucurbita maxima]2.0e-7795.62Show/hide
Query:  MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCG
        MDSESNLLEESSA  SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKD I SWVLSFQA PTKKAEKTNGEFYGFCG
Subjt:  MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCG

Query:  SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

XP_023516488.1 geranylgeranyl transferase type-1 subunit beta [Cucurbita pepo subsp. pepo]1.2e-7795.03Show/hide
Query:  MDSESNLLEESSA---SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFC
        MDSES LLEESSA   SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDI+ASWVLSFQALPTKK EKTNGEFYGFC
Subjt:  MDSESNLLEESSA---SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFC

Query:  GSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        GSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  GSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

TrEMBL top hitse value%identityAlignment
A0A0A0KNR1 Geranylgeranyl transferase type I subunit beta1.5e-7086.42Show/hide
Query:  MDSESNLLEESS----ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGF
        MDS+S LLE+SS    +SSSSGFDRDRHV FLE+MYQLLP QYQTQEINHLTLAYFVIS LDLLGAMDRVDKD IA+WVLSFQALPT KAEKT GE YGF
Subjt:  MDSESNLLEESS----ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGF

Query:  CGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        CGSRSSQFPPDE+GDLIHNGSHLASTYCAL ILKVIGYDFSNI+SESIAISMRNLQQSDG +
Subjt:  CGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

A0A5A7TM93 Geranylgeranyl transferase type I subunit beta2.8e-6983.83Show/hide
Query:  MDSESNLLEESSA---------SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNG
        MDS+S+LLE+SS          SSSSGFDRDRHV FLE+MYQLLP QYQTQEINHLTLAYFVIS LDLLGAMDRVDKD IA+WVLSFQALPT KAE   G
Subjt:  MDSESNLLEESSA---------SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNG

Query:  EFYGFCGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        EFYGFCGSRSSQFPP E+GDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  EFYGFCGSRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

A0A6J1C200 Geranylgeranyl transferase type I subunit beta3.9e-7188.54Show/hide
Query:  MDSESNLLEES-SASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGS
        MDSESNL EES ++SSSSGFDRDRHV FLE+MYQLLPS+YQTQEINHLTLAYFVIS LDLLG++D VDKD IASWVLSFQALPT KAEKTNG+FYGFCGS
Subjt:  MDSESNLLEES-SASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGS

Query:  RSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG
        RSSQFPPDEDG L+HNGSHLAS+YCALAILK+IGYDFSNIDSESIAISMRNLQQSDG
Subjt:  RSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG

A0A6J1E973 Geranylgeranyl transferase type I subunit beta3.5e-8098.1Show/hide
Query:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
        MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLP QYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR
Subjt:  MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR

Query:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  SSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

A0A6J1JUI6 Geranylgeranyl transferase type I subunit beta9.6e-7895.62Show/hide
Query:  MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCG
        MDSESNLLEESSA  SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKD I SWVLSFQA PTKKAEKTNGEFYGFCG
Subjt:  MDSESNLLEESSA--SSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCG

Query:  SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
        SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDG +
Subjt:  SRSSQFPPDEDGDLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

SwissProt top hitse value%identityAlignment
O80642 Geranylgeranyl transferase type-1 subunit beta2.1e-5368.49Show/hide
Query:  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDL
        +S S+ F++DRH+ +LE+MY+LLP  YQ+QEIN LTLA+F+IS L  LGA DRVDKD++A WVLSFQA PT +    +GEFYGF GSRSSQFP DE+GDL
Subjt:  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDL

Query:  IHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
         HNGSHLASTYCALAILKVIG+D S IDS+S+ ISM NLQQ DG +
Subjt:  IHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY

P53609 Geranylgeranyl transferase type-1 subunit beta1.8e-2036.02Show/hide
Query:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--
        +E   L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L ++D V+KD I  W+ S Q LPT+  +++N    GF GS   
Subjt:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--

Query:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
           F P +     H  +  H+A TY  L+ L ++G D S ++ E+    +R LQ  DG +C
Subjt:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

P53610 Geranylgeranyl transferase type-1 subunit beta1.2e-2136.65Show/hide
Query:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--
        +E + L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L ++D V+KD I  W+ S Q LPT+  +++N +  GF GS   
Subjt:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--

Query:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
           F P ++    H  +  H+A TY  L+ L ++G D S +D E+    +R LQ  DG +C
Subjt:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

Q5EAD5 Geranylgeranyl transferase type-1 subunit beta4.7e-2137.93Show/hide
Query:  FDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--
        F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L ++D V+KD I  W+ S Q LPT+  +++N    GF GS      F P ++    H  
Subjt:  FDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--SSQFPPDEDGDLIH--

Query:  NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
        +  H+A TY  L+ L ++G D S ++ E+    +R LQ  DG +C
Subjt:  NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

Q8BUY9 Geranylgeranyl transferase type-1 subunit beta6.1e-2136.02Show/hide
Query:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--
        +E + L  S       F RDRHV F +   Q+LP +Y + E + LT+A+F +S LD+L ++D V+KD I  W+ S Q LPT+  +++N    GF GS   
Subjt:  SESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSR--

Query:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC
           F P ++    H  +  H+A TY  L+ L ++G D   +D E+    +R LQ  DG +C
Subjt:  SSQFPPDEDGDLIH--NGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC

Arabidopsis top hitse value%identityAlignment
AT2G39550.1 Prenyltransferase family protein1.5e-5468.49Show/hide
Query:  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDL
        +S S+ F++DRH+ +LE+MY+LLP  YQ+QEIN LTLA+F+IS L  LGA DRVDKD++A WVLSFQA PT +    +GEFYGF GSRSSQFP DE+GDL
Subjt:  ASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDGDL

Query:  IHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY
         HNGSHLASTYCALAILKVIG+D S IDS+S+ ISM NLQQ DG +
Subjt:  IHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGAGTCGAACCTGTTAGAAGAATCATCCGCTTCTTCTTCTTCTGGTTTCGATAGAGATCGCCATGTGACGTTCTTGGAGTTGATGTACCAGTTGTTACCTAG
TCAGTATCAGACTCAGGAGATTAACCACCTTACACTTGCTTACTTCGTGATCTCCAGCCTTGACCTTCTTGGCGCCATGGATCGTGTCGACAAGGACATCATTGCTAGTT
GGGTCTTGTCCTTTCAGGCACTTCCTACAAAGAAGGCCGAAAAAACTAATGGAGAATTTTATGGATTCTGTGGATCAAGAAGTTCTCAGTTTCCTCCAGATGAGGATGGG
GATTTAATTCACAACGGTAGTCACTTGGCAAGCACATACTGTGCCCTTGCAATACTGAAGGTCATTGGTTATGACTTCTCCAATATTGACTCTGAATCAATTGCAATCTC
AATGAGAAACCTTCAGCAATCTGATGGAAGGTATTGTTGA
mRNA sequenceShow/hide mRNA sequence
AAATAAAATGGCGAAGAGCCGAGAGCCAAAGACAAGTCTTTCAGTCATCTAGAAAGGTGTCGCCATGGATTCAGAGTCGAACCTGTTAGAAGAATCATCCGCTTCTTCTT
CTTCTGGTTTCGATAGAGATCGCCATGTGACGTTCTTGGAGTTGATGTACCAGTTGTTACCTAGTCAGTATCAGACTCAGGAGATTAACCACCTTACACTTGCTTACTTC
GTGATCTCCAGCCTTGACCTTCTTGGCGCCATGGATCGTGTCGACAAGGACATCATTGCTAGTTGGGTCTTGTCCTTTCAGGCACTTCCTACAAAGAAGGCCGAAAAAAC
TAATGGAGAATTTTATGGATTCTGTGGATCAAGAAGTTCTCAGTTTCCTCCAGATGAGGATGGGGATTTAATTCACAACGGTAGTCACTTGGCAAGCACATACTGTGCCC
TTGCAATACTGAAGGTCATTGGTTATGACTTCTCCAATATTGACTCTGAATCAATTGCAATCTCAATGAGAAACCTTCAGCAATCTGATGGAAGGTATTGTTGA
Protein sequenceShow/hide protein sequence
MDSESNLLEESSASSSSGFDRDRHVTFLELMYQLLPSQYQTQEINHLTLAYFVISSLDLLGAMDRVDKDIIASWVLSFQALPTKKAEKTNGEFYGFCGSRSSQFPPDEDG
DLIHNGSHLASTYCALAILKVIGYDFSNIDSESIAISMRNLQQSDGRYC