CuGenDBv2

Gene ID	Carg04526
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L35-like
Genome location	Carg_Chr04:19980709..19981968
RNA-Seq Expression	Carg04526
Synteny	Carg04526
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602348.1 Dirigent protein 25, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-53

100

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

XP_022923169.1 60S ribosomal protein L35-like [Cucurbita moschata]

2.6e-53

100

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

XP_022941613.1 60S ribosomal protein L35-like [Cucurbita moschata]

1.3e-52

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

XP_022990488.1 60S ribosomal protein L35-like [Cucurbita maxima]

1.0e-52

99.19

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

XP_023525260.1 60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo]

1.3e-52

99.19

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLR YAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E5L3 60S ribosomal protein L35-like

1.3e-53

100

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

A0A6J1FH81 60S ribosomal protein L35

1.4e-52

98.37

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

A0A6J1FSL2 60S ribosomal protein L35-like

6.4e-53

98.37

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL+TERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

A0A6J1JTF2 60S ribosomal protein L35-like

4.9e-53

99.19

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SLVTERQKKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

A0A6J1JVN4 60S ribosomal protein L35

1.4e-52

98.37

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMYYPLRKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

1.1e-49

89.43

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Q9LZ41 60S ribosomal protein L35-4

4.1e-49

88.62

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Q9M3D2 60S ribosomal protein L35-3

1.2e-48

87.8

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Q9M5L0 60S ribosomal protein L35

1.7e-50

90.24

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK+KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ 
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Q9SF53 60S ribosomal protein L35-1

2.4e-49

88.62

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Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

7.7e-51

89.43

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

AT3G09500.1 Ribosomal L29 family protein

1.7e-50

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

AT3G55170.1 Ribosomal L29 family protein

8.5e-50

87.8

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

AT3G55170.2 Ribosomal L29 family protein

8.5e-50

87.8

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKK+MY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

AT5G02610.1 Ribosomal L29 family protein

2.9e-50

88.62

Show/hide

Query:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLVTERQKKKEMYYPLRKYAIKV
        SL TER+KKKEMY+P+RKYAIKV
Subjt:  SLVTERQKKKEMYYPLRKYAIKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTAC
TGGCGGAGCACCAAACAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACA
AGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACCGAGCGACAGAAGAAAAAG
GAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAG

mRNA sequence

Show/hide mRNA sequence

AGTCAACACGGTAGCAGCTCTTTTCACCCGGTTCCATCTTCTCTTCCTAGGGTTTCGCCGCGGGCGGCGCAGAGTCGAAGAGGACGCTAGAAGAAATGGCGAGGATTAAG
GTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCACCAAA
CAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTT
TGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACCGAGCGACAGAAGAAAAAGGAGATGTACTATCCA
TTGAGGAAATATGCTATTAAGGTGTAGTAGTATTGTCTTGTGTTTTTGTGGACAAGTTTTGTCTCGTGTTCTTGATAATCTTATGTCTGACACTCTTTAATCTTTCCCCC
CAAAACCGAAATGTTTGATTTTCATAGACAATTCTATATTTTTACTGATAGCGTAAGTTCAATTTCTGCTATTCCTTTCTTGAACAATCTTTAGCTTTCTTTTATCGGCT
TGTTTGATTGCTTCAGTTTCCTTGTCTGAAAGGAAGATTGTTTATATAG

Protein sequence

Show/hide protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKK
EMYYPLRKYAIKV

Carg04526 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome