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Carg04536 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04536
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S23
Genome locationCarg_Chr04:19894870..19896016
RNA-Seq ExpressionCarg04536
SyntenyCarg04536
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005680 - Ribosomal protein S23, eukaryotic/archaeal
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596454.1 Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6391.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

KAG7033018.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-78100Show/hide
Query:  MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE
        MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE
Subjt:  MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEE

Query:  NDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        NDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  NDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

PHU06613.1 40S ribosomal protein S23 [Capsicum chinense]1.5e-6383.02Show/hide
Query:  MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAF
        M N C++      + S  GKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAF
Subjt:  MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAF

Query:  VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

XP_004137806.1 40S ribosomal protein S23 [Cucumis sativus]1.5e-6391.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

XP_022888598.1 40S ribosomal protein S23-like [Olea europaea var. sylvestris]1.5e-6391.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

TrEMBL top hitse value%identityAlignment
A0A0A0KCM2 Uncharacterized protein7.3e-6491.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A1S3B6Y1 40S ribosomal protein S237.3e-6491.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A2G9GIG2 40S ribosomal protein S237.3e-6491.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A6I9T358 40S ribosomal protein S237.3e-6491.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A6J1JN26 40S ribosomal protein S23-like7.3e-6491.49Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S234.9e-6589.36Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

P49201 40S ribosomal protein S23-21.7e-6287.94Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9GRJ3 40S ribosomal protein S237.3e-5373.94Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL
        GK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G            G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL

Query:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        +AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Subjt:  IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9M5Z9 40S ribosomal protein S234.1e-6488.65Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9SF35 40S ribosomal protein S23-18.1e-6085.82Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA             GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein5.7e-6185.82Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA             GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

AT5G02960.1 Ribosomal protein S12/S23 family protein1.2e-6387.94Show/hide
Query:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
        GKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAG            GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI
Subjt:  GKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAG------------GIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLI

Query:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  AGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

ATCG00065.1 ribosomal protein S12A6.9e-0641.18Show/hide
Query:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK

ATCG00905.1 ribosomal protein S12C6.9e-0641.18Show/hide
Query:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK

ATCG01230.1 ribosomal protein S12B6.9e-0641.18Show/hide
Query:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATTGTTGTTTGATATGTGTAACCGTTCAGACGGAAGACTCGTGGAATGGGAAGACTCGTGGAATGGGAGCGGGTCGTAAGTTGAAGTCCCACCGTCGGAGGCA
GAGGTGGGCCGATAAGGCGTATAAGAAGTCCCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGTGGTATTGAAGCCAAACAGCCAAATTCTGCTATTCGAAAATGTG
CTCGTGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCTTTTGTACCTAATGACGGTTGCTTAAATTACATCGAGGAAAATGACGAAGTATTGATCGCGGGGTTTGGA
CGGAAGGGTCATGCCGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTGAAGGTTTCTGGAGTTTCGCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTC
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATTGTTGTTTGATATGTGTAACCGTTCAGACGGAAGACTCGTGGAATGGGAAGACTCGTGGAATGGGAGCGGGTCGTAAGTTGAAGTCCCACCGTCGGAGGCA
GAGGTGGGCCGATAAGGCGTATAAGAAGTCCCATCTTGGTAACGAGTGGAAAAAGCCCTTTGCAGGTGGTATTGAAGCCAAACAGCCAAATTCTGCTATTCGAAAATGTG
CTCGTGTTCAACTCATTAAAAATGGGAAGAAGATCGCTGCTTTTGTACCTAATGACGGTTGCTTAAATTACATCGAGGAAAATGACGAAGTATTGATCGCGGGGTTTGGA
CGGAAGGGTCATGCCGTGGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTGAAGGTTTCTGGAGTTTCGCTCTTGGCTCTCTTCAAAGAGAAGAAAGAGAAGCCAAGGTC
CTAG
Protein sequenceShow/hide protein sequence
MANCCLICVTVQTEDSWNGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG
RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS