CuGenDBv2

Gene ID	Carg04544
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIF subunit beta
Genome location	Carg_Chr04:19847104..19855596
RNA-Seq Expression	Carg04544
Synteny	Carg04544
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602326.1 General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-106

85.71

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Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDP+QSNDDDDSSSTE    +        +  
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
          L  ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

KAG7033010.1 tfg2, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.2e-142

100

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Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEVSFILNLHTHLVLSLRL
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEVSFILNLHTHLVLSLRL
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEVSFILNLHTHLVLSLRL

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]

2.1e-97

79.84

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Query:  MDGDDKPIDRGSSRKLHSNSSTVA--GTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWI
        MD DDKPIDR SSRKL +N+++V+  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTE + + L        
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVA--GTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWI

Query:  GGSLLTI---ITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
        G SL +    ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVV
Subjt:  GGSLLTI---ITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV

Query:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        SKGSE KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]

2.5e-106

85.71

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Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSST AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTE    +        +  
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
          L  ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

XP_022990432.1 general transcription factor IIF subunit 2-like [Cucurbita maxima]

8.6e-107

86.13

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Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTE    +        +  
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
          L  ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

9.6e-96

78.66

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSST-VAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIG
        MD D K IDR +SRK  +N++  V GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTE    +        + 
Subjt:  MDGDDKPIDRGSSRKLHSNSST-VAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIG

Query:  GSLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
           L  ++T+++P  + S  + GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  GSLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        E KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPE
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

7.4e-96

77.96

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSST-VAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIG
        MD D K IDR +SRK  +N++  V GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTE    +        + 
Subjt:  MDGDDKPIDRGSSRKLHSNSST-VAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIG

Query:  GSLLTIITTEYLPDGI------NSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK
           L  ++T+++P  +      +SSF LGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK
Subjt:  GSLLTIITTEYLPDGI------NSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK

Query:  VVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        VVSKGSE KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPE
Subjt:  VVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

1.0e-97

79.84

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Query:  MDGDDKPIDRGSSRKLHSNSSTVA--GTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWI
        MD DDKPIDR SSRKL +N+++V+  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTE + + L        
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVA--GTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWI

Query:  GGSLLTI---ITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
        G SL +    ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVV
Subjt:  GGSLLTI---ITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV

Query:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        SKGSE KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

A0A6J1HK34 Transcription initiation factor IIF subunit beta

1.2e-106

85.71

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSST AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTE    +        +  
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
          L  ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

4.2e-107

86.13

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG
        MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTE    +        +  
Subjt:  MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGG

Query:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
          L  ++T+++P  + S    GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SLLTIITTEYLPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
        NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPE

SwissProt top hits

e value

%identity

Alignment

P41900 General transcription factor IIF subunit 2

2.2e-04

23.25

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRALSNSPDD-----------PSRPVAKVIVSVDP-LQSNDDDDSSSTE-VYNVILLWRFWFWIGGSLLTIITTEYLPDGI
        L+ + A R +WL+K P+ + +    +P +           P +  A+V +S+ P + + D ++   TE + +V  + +         L + +     DG 
Subjt:  LETNKADRAMWLLKCPQVVTRALSNSPDD-----------PSRPVAKVIVSVDP-LQSNDDDDSSSTE-VYNVILLWRFWFWIGGSLLTIITTEYLPDGI

Query:  NSSFNLG------KFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERG
         +S          K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++ 
Subjt:  NSSFNLG------KFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERG

Query:  ELEKIIFRLFERQPYWTSKQLIQETDQP
         +  ++F  FE+  Y+  K L++ T+QP
Subjt:  ELEKIIFRLFERQPYWTSKQLIQETDQP

Q03123 General transcription factor IIF subunit 2

7.5e-05

23.94

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Query:  IGGSLLTIITTEYLPDGINSSFN--LGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV
        +GG  LT++T        + S N  + K  +EG ++++ + +P     D+Y ++ R++  +S    RQ Q ++     + +P+       +    +KK  
Subjt:  IGGSLLTIITTEYLPDGINSSFN--LGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVV

Query:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQP
         K  + KR R ++ ++  ++F  FE+  Y+  K L+  T QP
Subjt:  SKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQP

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

4.3e-40

43.64

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRA---------LSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGGSLLTIITTEYLPDGINSSF
        L+  K+DR++WL+KCP VV +A          S +  D    +AK++  VDPL+   DD     ++Y   ++   +  +       + T+++P G  S  
Subjt:  LETNKADRAMWLLKCPQVVTRA---------LSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGGSLLTIITTEYLPDGINSSF

Query:  NLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR
        N G    EGK+ +KFDMKP+ + ++ Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  NLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQP
        LFE QP WT KQL+QETDQP
Subjt:  LFERQPYWTSKQLIQETDQP

AT3G52270.1 Transcription initiation factor IIF, beta subunit

8.2e-47

45.95

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRALSN--------SPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGGSL----LTIITTEYLPDGIN
        LET  A+R+M L+K P +V  +L +         PDDP RP AKVI+ VDPL   D+      E+              G++       ++ +++P  + 
Subjt:  LETNKADRAMWLLKCPQVVTRALSN--------SPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGGSL----LTIITTEYLPDGIN

Query:  SSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIF
           + GK +VEGKI NKFDM+PH++N++SYG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++R E+E+++F
Subjt:  SSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIF

Query:  RLFERQPYWTSKQLIQETDQPE
         LFERQ  WT + LIQETDQPE
Subjt:  RLFERQPYWTSKQLIQETDQPE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGGCGACGACAAACCCATCGACCGTGGCAGTTCCAGAAAACTCCACAGCAATAGCAGCACCGTCGCCGGAACCGACTTCTTGGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGTTGTAACTCGCGCCCTTTCCAATTCGCCGGATGATCCTTCTCGTCCGGTCGCTAAGGTCATTGTTTCTGTTGATCCTCTGCAGT
CGAATGACGACGATGATTCTTCATCTACTGAGGTATATAATGTCATCTTGCTATGGCGTTTTTGGTTTTGGATTGGGGGCTCTCTTCTTACTATCATTACTACAGAATAT
CTGCCTGATGGTATCAATTCTTCTTTCAATTTAGGGAAGTTTACTGTTGAAGGAAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGATAGTTACGG
GAAACTCTGTCGTGAAAGAACTCACAAATCCATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGT
TGTCATTTGGAGCTGCAGAGAAGAAGAAGGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGCGAATTGGAGAAGATCATTTTTAGGCTCTTTGAA
AGACAGCCATATTGGACCTCGAAACAATTGATTCAAGAGACCGATCAACCTGAAGTAAGCTTTATCTTGAATTTGCACACCCATCTAGTACTAAGTTTGCGCCTATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEVYNVILLWRFWFWIGGSLLTIITTEY
LPDGINSSFNLGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFE
RQPYWTSKQLIQETDQPEVSFILNLHTHLVLSLRL

Carg04544 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome