CuGenDBv2

Gene ID	Carg04622
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S25
Genome location	Carg_Chr04:19352290..19353258
RNA-Seq Expression	Carg04622
Synteny	Carg04622
Gene Ontology terms	GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004977 - Ribosomal protein S25

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7032934.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-36

100

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

XP_004140903.1 40S ribosomal protein S25-2 [Cucumis sativus]

3.7e-35

95.18

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

XP_008456601.1 PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]

6.4e-35

95.18

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

XP_022953196.1 40S ribosomal protein S25-2 [Cucurbita moschata]

9.8e-36

98.8

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

XP_022990471.1 40S ribosomal protein S25-2-like [Cucurbita maxima]

2.2e-35

97.59

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLAR+AIKDLMARGSIRMISAHSSQEIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KB40 40S ribosomal protein S25

1.8e-35

95.18

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

A0A5D3CKR9 40S ribosomal protein S25

3.1e-35

95.18

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

A0A6J1BYI5 40S ribosomal protein S25

3.1e-35

95.18

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLMARGSIRMISAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

A0A6J1GMB9 40S ribosomal protein S25

4.8e-36

98.8

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

A0A6J1JN15 40S ribosomal protein S25

1.1e-35

97.59

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLAR+AIKDLMARGSIRMISAHSSQEIYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

SwissProt top hits

e value

%identity

Alignment

P46301 40S ribosomal protein S25

1.9e-34

85.54

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKLITPS+LSDR+RI+GSLAR+AI+DLMARGSIRM+SAH+SQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Q8GYL5 40S ribosomal protein S25-3

1.6e-33

85.37

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATN
        +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LMA+G+IRM+SAHSSQ+IYTRAT+
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATN

Q9SIK2 40S ribosomal protein S25-2

5.1e-35

87.95

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM+SAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Q9SIW5 40S ribosomal protein S25-1

2.6e-31

81.48

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRAT
        +KWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLAR+AI+DLM +G+IRM+S HSSQ+I TRAT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRAT

Q9T029 40S ribosomal protein S25-4

5.6e-34

85.54

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM++AHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Arabidopsis top hits

e value

%identity

Alignment

AT2G21580.1 Ribosomal protein S25 family protein

3.6e-36

87.95

Show/hide

Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM+SAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein

3.6e-36

87.95

Show/hide

Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM+SAHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein

1.2e-34

85.37

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATN
        +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LMA+G+IRM+SAHSSQ+IYTRAT+
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATN

AT4G39200.1 Ribosomal protein S25 family protein

4.0e-35

85.54

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Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM++AHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein

4.0e-35

85.54

Show/hide

Query:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
        +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LMA+G IRM++AHSSQ+IYTRATNT
Subjt:  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Sequences

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CDS sequence

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mRNA sequence

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CAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCAC
TCCTTCAATCCTTTCTGATAGGATGAGGATCAACGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTC
AGGAGATATACACCAGAGCAACCAACACCTAAACATAATTGATCTCACTCGTGCCCGGAAGGGTATATAGATGTGTAGCTGCCTTTGCATTTTTGCAATTCCAAATTTTG
TTCAGCGAAGAGATTAGATTTTGGTTTGTTAAAATGGCTAGATGATCTCGAAATGTGACGTTTTAATTCGTTTTAGTGTTATTCTGCCTTTGAATCCAGGATCCTCATTG
AGTCACTTGGTTCTTATAATCGTGTTATTAGATCAGTTGTTTTAGCTTATTTCTAATCATAATGGTATTCGAAACAAAAACAAGTATGGGAAGAGAAAAGTGTTTTTGTA
GATATGGTCATTTTAATATTTAATTGCATTTGGATTGCTTCAAGTTAGAACAAAACTTGAAATTTTAATTAACACCCTCAAATCTAAACACTAATACTAGTTAGCCTAAT
TAATGATTCTAAAGTTTGTTTAAA

Protein sequence

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QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT

Carg04622 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome