; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04641 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04641
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr11:12832008..12832514
RNA-Seq ExpressionCarg04641
SyntenyCarg04641
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589274.1 hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia]2.0e-9199.4Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSREL LNGGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

KAG7022971.1 putative E3 ubiquitin-protein ligase LUL4, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-92100Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

XP_022930871.1 uncharacterized protein LOC111437226 [Cucurbita moschata]2.0e-9198.81Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKG+GCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSL+RLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

XP_022988657.1 RING finger protein 141-like [Cucurbita maxima]1.3e-9098.21Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKGMGCCGG+WSSTSSTLTMIDGIGLSRHGSSRSHRDDG RSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRL GGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

XP_023531397.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo]2.0e-9199.4Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSREL LNGGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

TrEMBL top hitse value%identityAlignment
A0A5A7V0I3 Zf-C3HC4_3 domain-containing protein1.4e-7485.29Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE
        MER NRG+RWANLKQRLGL KGMGCC GSWS TSSTLTMI+G  LS HGSSRS R+DG RSSAASGMNLAMALAAERNL ++EGGPT   +VKSLMRLFE
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE

Query:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        E+DGGDWKT+RKE ENNGDW+CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPICSRSIIEILDIF
Subjt:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

A0A6J1EWQ9 uncharacterized protein LOC1114372269.5e-9298.81Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKG+GCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSL+RLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

A0A6J1GME5 RNA-binding protein MEX3B-like1.1e-7685.88Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE
        MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG RSSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFE
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE

Query:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        E+DGGDWKT+RKESEN GDW+CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Subjt:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

A0A6J1HXI8 RNA-binding protein MEX3B-like1.1e-7685.88Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE
        MER N G+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G+ LSRHGSSRSHR+DG RSSA+SG+NLAMALAAERNL T+EGGPT  G+VKSLMRLFE
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLMRLFE

Query:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        E+DGGDWKT+RKESEN GDW+CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Subjt:  EIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

A0A6J1JM70 RING finger protein 141-like6.1e-9198.21Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
        MERPNRGQRWANLKQRLGLMKGMGCCGG+WSSTSSTLTMIDGIGLSRHGSSRSHRDDG RSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEI

Query:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRL GGTCPICSRSIIEILDIF
Subjt:  DGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

SwissProt top hitse value%identityAlignment
P43254 E3 ubiquitin-protein ligase COP11.4e-0431.17Show/hide
Query:  PTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI
        P   +V       E  DGG   +     + + D LC +CM+  K A    CGH+FC +C      N   CP CS+ +
Subjt:  PTVGNVKSLMRLFEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSI

Q8LA32 Probable E3 ubiquitin-protein ligase LUL45.9e-0644.9Show/hide
Query:  CCVCMERSKGAAFIPCGH-TFCRVCSRELRLNGGTCPICSRSIIEILDI
        C +CM  +K  A +PC H   C  C++ELRL    CPIC + I E+L+I
Subjt:  CCVCMERSKGAAFIPCGH-TFCRVCSRELRLNGGTCPICSRSIIEILDI

Arabidopsis top hitse value%identityAlignment
AT1G62370.1 RING/U-box superfamily protein7.6e-2543.02Show/hide
Query:  RWANLKQRLGLMKGMGCCGGSWS---STSSTLTMIDGIGLSRHGSSR--SHRDDGTRS-----SAASGMNLAMALAAER--NLTEEGGPTVGNVKSLMRL
        +W  LKQRL     +GCCG   +     + T  ++D         ++     D GT +     +  S  NLA ALA ER  ++TEE   T      LMRL
Subjt:  RWANLKQRLGLMKGMGCCGGSWS---STSSTLTMIDGIGLSRHGSSR--SHRDDGTRS-----SAASGMNLAMALAAER--NLTEEGGPTVGNVKSLMRL

Query:  FEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
          E DG D  T    +    D LCCVCM R KGAAFIPCGHT+CRVCSRE+ +N GTCP+C+RSI ++LD++
Subjt:  FEEIDGGDWKTRRKESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

AT3G25030.1 RING/U-box superfamily protein7.3e-2037.5Show/hide
Query:  MERPNRGQR----WANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGS-------SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTV
        M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S       S S       SS    + L   LA ER L+  EE  P  
Subjt:  MERPNRGQR----WANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGS-------SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTV

Query:  GNVK----SLMRLFEEIDGG-DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
          V+    SLM L EE +G   + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+C+ +I+E+LD+F
Subjt:  GNVK----SLMRLFEEIDGG-DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

AT3G25030.2 RING/U-box superfamily protein7.3e-2037.5Show/hide
Query:  MERPNRGQR----WANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGS-------SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTV
        M+R +R  R    W +L+++L L +     G  W S++S  ++   I    + S       S S       SS    + L   LA ER L+  EE  P  
Subjt:  MERPNRGQR----WANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGS-------SRSHRDDGTRSSAASGMNLAMALAAERNLT--EEGGPTV

Query:  GNVK----SLMRLFEEIDGG-DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
          V+    SLM L EE +G   + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSREL +  G CP+C+ +I+E+LD+F
Subjt:  GNVK----SLMRLFEEIDGG-DWKTRRKESENN------GDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

AT4G03965.1 RING/U-box superfamily protein3.3e-2845.41Show/hide
Query:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWS--STSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL----TEEGGPTVGNVKSLM
        ++R  R +R   LK+RLG  K +GCCG +W    TS+T    D    +R  S   H           GMNLA ALAAERN     TE  G       SLM
Subjt:  MERPNRGQRWANLKQRLGLMKGMGCCGGSWS--STSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNL----TEEGGPTVGNVKSLM

Query:  RLFEE------IDGGDWKTRRKESEN-----NGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
        RL EE      ++  + +     + +     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+ LN G+CP+C+R IIEILDI+
Subjt:  RLFEE------IDGGDWKTRRKESEN-----NGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF

AT4G22250.1 RING/U-box superfamily protein2.4e-2642.78Show/hide
Query:  QRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRS-------------SAASGMNLAMALAAER----NLTEEGGPTVGNV
        +R   LK+RL   K +GCCG +W+   +  T +          S + RDD                  + +GMNLA AL AER      TE         
Subjt:  QRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRS-------------SAASGMNLAMALAAER----NLTEEGGPTVGNV

Query:  KSLMRLFEEIDGGDWKTRRKESE---------NNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF
         SLMRL EE          KE+E            D +CCVCM R KGAAFIPCGHTFCRVCSREL LN G+CP+C+R IIEILDIF
Subjt:  KSLMRLFEEIDGGDWKTRRKESE---------NNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTT
GACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGG
CGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGATGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAG
GAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACT
ACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGGCCAAATCGAGGGCAGAGATGGGCCAATTTGAAGCAACGGCTAGGACTGATGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTTCAACATCGTCAACTTT
GACGATGATTGATGGTATAGGTTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGACGATGGGACTCGGAGCTCTGCAGCTTCCGGGATGAACTTGGCGATGGCTCTGG
CGGCTGAGAGAAACTTGACCGAGGAAGGAGGCCCCACCGTCGGCAATGTGAAATCACTGATGAGATTATTTGAAGAAATAGACGGTGGGGATTGGAAGACGAGAAGAAAG
GAGAGTGAGAACAACGGTGATTGGTTGTGCTGCGTGTGCATGGAGAGGAGTAAAGGTGCTGCTTTTATTCCCTGTGGACACACCTTTTGTAGGGTATGTTCTAGGGAACT
ACGGCTCAACGGAGGCACATGTCCTATTTGCAGCCGTTCGATCATTGAGATTCTTGATATTTTTTAA
Protein sequenceShow/hide protein sequence
MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTRSSAASGMNLAMALAAERNLTEEGGPTVGNVKSLMRLFEEIDGGDWKTRRK
ESENNGDWLCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF