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Carg04681 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04681
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnucleolar complex protein 3 homolog
Genome locationCarg_Chr11:13035263..13036145
RNA-Seq ExpressionCarg04681
SyntenyCarg04681
Gene Ontology termsGO:0006270 - DNA replication initiation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0003682 - chromatin binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051103.1 nucleolar complex protein 3-like protein [Cucumis melo var. makuwa]6.0e-1171.43Show/hide
Query:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        N C  IDENEVKEKL TRF LLRDIKDNERLR++LE  T SLQLYEEYK      K
Subjt:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

KAG6589312.1 hypothetical protein SDJN03_17877, partial [Cucurbita argyrosperma subsp. sororia]1.2e-27100Show/hide
Query:  KVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT
        KVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT
Subjt:  KVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT

KAG7023011.1 hypothetical protein SDJN02_16747, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-34100Show/hide
Query:  MFWIRRVVGRKVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT
        MFWIRRVVGRKVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT
Subjt:  MFWIRRVVGRKVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT

XP_008447119.1 PREDICTED: nucleolar complex protein 3 homolog [Cucumis melo]6.0e-1171.43Show/hide
Query:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        N C  IDENEVKEKL TRF LLRDIKDNERLR++LE  T SLQLYEEYK      K
Subjt:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

XP_038888360.1 nucleolar complex protein 3 homolog [Benincasa hispida]6.0e-1170.18Show/hide
Query:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        ++ CSAIDENEVKEKL TRF LLRDIKDNERLR +L+  T SLQLYEEYK      K
Subjt:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

TrEMBL top hitse value%identityAlignment
A0A1S3BGN9 nucleolar complex protein 3 homolog2.9e-1171.43Show/hide
Query:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        N C  IDENEVKEKL TRF LLRDIKDNERLR++LE  T SLQLYEEYK      K
Subjt:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

A0A5A7U5F2 Nucleolar complex protein 3-like protein2.9e-1171.43Show/hide
Query:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        N C  IDENEVKEKL TRF LLRDIKDNERLR++LE  T SLQLYEEYK      K
Subjt:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

A0A5D3BSN6 Nucleolar complex protein 3-like protein2.9e-1171.43Show/hide
Query:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        N C  IDENEVKEKL TRF LLRDIKDNERLR++LE  T SLQLYEEYK      K
Subjt:  NMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

A0A6J1D2Q0 nucleolar complex protein 3 homolog1.1e-1070.18Show/hide
Query:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK
        ++ CSAIDENEVKEKL TRFSLLRDIK+NERLR  L   T SLQLYEEYK      K
Subjt:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVK

A0A6J1EXV6 nucleolar complex protein 3 homolog5.0e-1178Show/hide
Query:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYK
        ++ CSAIDENEVKEKL TRF LLRDIK+NERLR +LE  T SLQLYEEYK
Subjt:  VNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTGGATCCGCAGAGTCGTTGGCAGGAAAGTTAACATGTGCAGCGCCATTGACGAGAATGAAGTGAAGGAAAAACTTGATACAAGATTCTCTCTTCTCCGGGACAT
CAAAGACAATGAAAGATTGAGGACTAAATTGGAGCATGCCACTTCGTCTTTGCAGCTATACGAAGAATACAAAAGCAACATGACTTCAGTTAAAACGCATACGCAAGAAG
CAGTCTTTGGAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTGGATCCGCAGAGTCGTTGGCAGGAAAGTTAACATGTGCAGCGCCATTGACGAGAATGAAGTGAAGGAAAAACTTGATACAAGATTCTCTCTTCTCCGGGACAT
CAAAGACAATGAAAGATTGAGGACTAAATTGGAGCATGCCACTTCGTCTTTGCAGCTATACGAAGAATACAAAAGCAACATGACTTCAGTTAAAACGCATACGCAAGAAG
CAGTCTTTGGAACTTGAGCTTGAGCAGGTAAAGAAGAATTTTGAGCAGATAGATATCTATATGTATTTGTAGTTCATGCTTCATCCATTGGATCAAAATAGAAATTGATA
GATATTATTGATTGAGACCGTGTAGATGACAACCAACCGAAATAAAAGTCGTCCTGATTTTGTCTT
Protein sequenceShow/hide protein sequence
MFWIRRVVGRKVNMCSAIDENEVKEKLDTRFSLLRDIKDNERLRTKLEHATSSLQLYEEYKSNMTSVKTHTQEAVFGT