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Carg04718 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04718
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE5-like
Genome locationCarg_Chr13:9652390..9652849
RNA-Seq ExpressionCarg04718
SyntenyCarg04718
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]3.6e-3598.75Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN
        MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKHLLN
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-35100Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN
        MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]3.0e-2177.33Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]3.2e-2377.5Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]2.0e-2580.25Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN
        MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LL+
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein9.6e-2680.25Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN
        MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LL+
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN

A0A1S3B0J1 transcription factor PRE5-like1.5e-2377.5Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

A0A2P5YWD3 BHLH domain-containing protein4.6e-1256.1Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLH-TSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKHLL
        AS+ + DD+L  L+ RL TLLPQLNH  H  ++ ST +ILKETC YI++LQ+EVDDLSERL + LDSM +   D E + +LL
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLH-TSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGV---DFEMVKHLL

A0A5A7SZP9 Transcription factor PRE5-like1.5e-2377.5Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLL

A0A5D3BKI2 Transcription factor PRE5-like1.4e-2177.33Show/hide
Query:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
A2XD15 Transcription factor ILI36.0e-0941.56Show/hide
Query:  LPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER---LWKQLDSMGVDFEMVKHLL
        + D+++  L+S+LQ LLP+ + +   S  S +++LKETC YIK L REVDDLS+R   L   +D+     E+++ LL
Subjt:  LPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER---LWKQLDSMGVDFEMVKHLL

Q8GW32 Transcription factor PRE61.2e-0943.21Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLN
        SS + DDQ+ +L+S+LQ L+P+L     +  VS +++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LLN
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLN

Q9CA64 Transcription factor PRE34.6e-0949.15Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL
        +S + +DQ+ +L+ +LQ LLP+L  +  +  VS A +L++TC+YI+ L REVDDLSERL
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE54.2e-1044.93Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S + DDQ+ +L+S+L+  LP+++    +  VS +++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

Q9LXG5 Transcription factor PRE21.2e-0941.79Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS + DDQ+ +L+S+L+  +P++     ++TVS +++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.6e-1143.21Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLN
        SS + DDQ+ +L+S+LQ L+P+L     +  VS +++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LLN
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKHLLN

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.3e-1049.15Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL
        +S + +DQ+ +L+ +LQ LLP+L  +  +  VS A +L++TC+YI+ L REVDDLSERL
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.0e-1144.93Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S + DDQ+ +L+S+L+  LP+++    +  VS +++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 31.6e-0944.62Show/hide
Query:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDS
        +S + D+Q+ +L+ +L  LLP+L +   +  VS + +L+ETC YI+ L +EVDDLSERL + L+S
Subjt:  SSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDS

AT5G15160.1 BANQUO 28.6e-1141.79Show/hide
Query:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS + DDQ+ +L+S+L+  +P++     ++TVS +++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCCACACCTCCACCGTATCAACGGC
AGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGATTCCATGGGTGTTGACTTTGAAA
TGGTTAAACATCTCCTCAATTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCTTTTCTTTGCTTCACTCATGGCTTCCTCCACATTACCCGACGACCAACTTCGAAATCTTCTCTCCAGATTGCAAACCTTGCTCCCTCAACTCAACCATACACTCC
ACACCTCCACCGTATCAACGGCAGAGATTTTGAAGGAGACGTGTGATTACATAAAGAAATTGCAGAGGGAGGTAGATGATCTAAGTGAGAGGCTATGGAAGCAGCTCGAT
TCCATGGGTGTTGACTTTGAAATGGTTAAACATCTCCTCAATTGAGAATGTTTAGTTAATAATATTTCAAGTTCTCTTGTTCTCGAAGTTAAATCTTTCCATATCATTTT
TCTCTCTCATTATTTTGTATTATGATGTTTTGCGTTACCAACCAACCGCTGAGA
Protein sequenceShow/hide protein sequence
MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKHLLN