; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04772 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04772
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCleavage stimulation factor 50 kDa subunit
Genome locationCarg_Chr13:9357792..9363229
RNA-Seq ExpressionCarg04772
SyntenyCarg04772
Gene Ontology termsGO:0031124 - mRNA 3'-end processing (biological process)
GO:0005848 - mRNA cleavage stimulating factor complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR044633 - Cleavage stimulation factor subunit 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584397.1 Cleavage stimulation factor subunit 50, partial [Cucurbita argyrosperma subsp. sororia]6.9e-11454.36Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRASAIDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   AVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

KAG7019984.1 Cleavage stimulation factor subunit 50, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-238100Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKDNSITVSVKDYRFTPIRA
        ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKDNSITVSVKDYRFTPIRA
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKDNSITVSVKDYRFTPIRA

Query:  NYLLASVSFPLFIKVVYSLTWGNASGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQYSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRR
        NYLLASVSFPLFIKVVYSLTWGNASGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQYSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRR
Subjt:  NYLLASVSFPLFIKVVYSLTWGNASGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQYSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRR

Query:  QPVQNLQRDERYVLSCGKDSTVKLWTWGRERLSKICLELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFI
        QPVQNLQRDERYVLSCGKDSTVKLWTWGRERLSKICLELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFI
Subjt:  QPVQNLQRDERYVLSCGKDSTVKLWTWGRERLSKICLELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFI

Query:  SCGTDKSIRFWKETL
        SCGTDKSIRFWKETL
Subjt:  SCGTDKSIRFWKETL

XP_022923614.1 cleavage stimulation factor subunit 50 isoform X1 [Cucurbita moschata]9.1e-11454.16Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRASAIDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   AVFNDNEEFVLSIDEPSNE+VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

XP_023001188.1 cleavage stimulation factor subunit 50 isoform X1 [Cucurbita maxima]2.6e-11353.96Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRASAIDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   A FNDNEEFVLSIDEPSNE+VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

XP_023519048.1 cleavage stimulation factor subunit 50 isoform X1 [Cucurbita pepo subsp. pepo]7.7e-11353.75Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEG FEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRAS IDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   AVFNDNEEFVLSIDEPSNE+VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

TrEMBL top hitse value%identityAlignment
A0A0A0LVN0 Cleavage stimulation factor 50 kDa subunit1.8e-10451.12Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDG+LYRQVNSLIVAHLRDHNLTQ                         AASAAASA+ TPLNVDVPP KLMELVAKGLAVEK+E LRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSS+P+TFGS QPSR SAIDF                             ST QDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG
        S  +S+K             D +  P+R                     N +L S      + F  F K+              V S++   +     +G
Subjt:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDH I P       F  F      +IGN+GAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDS+VKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  RL K  +    +QL   AVFND EEFVLSIDEPSNE+VIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKE+L
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

A0A1S3BUL1 Cleavage stimulation factor 50 kDa subunit8.3e-10551.32Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASA+ TPLNVD+PP KLMELVAKGLAVEK+E LRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVP+TFGS QPSRASAI+F                             ST QDTK SSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG
        S  +S+K             D +  P+R                     N +L S      + F  F K+              V S++   +     +G
Subjt:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDH I         F  F      +IGN+GAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDS+VKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  RL K  +    MQL   AVFND EEFVLSIDEPSNE+VIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

A0A5D3BGR2 Cleavage stimulation factor 50 kDa subunit3.6e-10852.33Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSL+                   AASAAASA+ TPLNVD+PP KLMELVAKGLAVEK+E LRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVP+TFGS QPSRASAI+F                             ST QDTK SSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG
        S  +S+K             D +  P+R                     N +L S      + F  F K+              V S++   +     +G
Subjt:  SITVSVK-------------DYRFTPIR--------------------ANYLLAS------VSFPLFIKV--------------VYSLTWGNA-----SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDH I         F  F      +IGN+GAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDS+VKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  RL K  +    MQL   AVFND EEFVLSIDEPSNE+VIWDALTAERVARWPSNH+G PRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

A0A6J1E6X2 Cleavage stimulation factor 50 kDa subunit4.4e-11454.16Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRASAIDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   AVFNDNEEFVLSIDEPSNE+VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

A0A6J1KPS8 Cleavage stimulation factor 50 kDa subunit1.3e-11353.96Show/hide
Query:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
        MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQ                         AASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP
Subjt:  MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSP

Query:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N
        ASALYEFGSSVPSTFGSTQPSRASAIDF                             STVQDTKGSSKNFPKHETRHLSEHK+                 
Subjt:  ASALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKD----------------N

Query:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG
        S  +S+K +    I+   L  S   P+   I+  Y                                  LT   A                       +G
Subjt:  SITVSVKDYRFTPIRANYLLASVSFPL--FIKVVY---------------------------------SLTWGNA-----------------------SG

Query:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL
        TDHPI         F  F      +IGNSGAINQ  YSATGSMYVTASKDGAV+       + + + +  H        +   +DERYVLSCGKDSTVKL
Subjt:  TDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKL

Query:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        W  G  +L K  +    MQL   A FNDNEEFVLSIDEPSNE+VIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
Subjt:  WTWGRERLSKICLELLIMQL--SAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

SwissProt top hitse value%identityAlignment
Q8L4J2 Cleavage stimulation factor subunit 502.9e-7038.09Show/hide
Query:  GSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPAS
        G  EQ LQDG ++RQ+N+LIVAHLR HNL+Q                          ASA ASA+ TPLN++VPPN+L+ELVAKGLA E    LRG  +S
Subjt:  GSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPAS

Query:  ALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHK--------------------
         L      +PS++GS    R ++IDFS                              V   KGSSK  PKHE++ LSEHK                    
Subjt:  ALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHK--------------------

Query:  DNSITV----------------------------SVKDYRFTPIRANYLLAS-----VSFPLFIKV--------------VYSLTWGNA-----SGTDHP
        D SI +                             + D  F P R+  L++S     + F  F K               V S+++  +     +GTDHP
Subjt:  DNSITV----------------------------SVKDYRFTPIRANYLLAS-----VSFPLFIKV--------------VYSLTWGNA-----SGTDHP

Query:  IEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDSTVKLWT
        I P       +  F    F   G SGAINQ  YS+TGS+Y+TASKDGA++       + V +   +     +  V +    +D+R+VLS GKDSTVKLW 
Subjt:  IEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDSTVKLWT

Query:  WGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
         G  R+ K  L  + + ++  A+FND EEFV+SIDE SNEVV WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+SIRFWKE++
Subjt:  WGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

Arabidopsis top hitse value%identityAlignment
AT5G60940.1 Transducin/WD40 repeat-like superfamily protein2.0e-7138.09Show/hide
Query:  GSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPAS
        G  EQ LQDG ++RQ+N+LIVAHLR HNL+Q                          ASA ASA+ TPLN++VPPN+L+ELVAKGLA E    LRG  +S
Subjt:  GSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPAS

Query:  ALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHK--------------------
         L      +PS++GS    R ++IDFS                              V   KGSSK  PKHE++ LSEHK                    
Subjt:  ALYEFGSSVPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHK--------------------

Query:  DNSITV----------------------------SVKDYRFTPIRANYLLAS-----VSFPLFIKV--------------VYSLTWGNA-----SGTDHP
        D SI +                             + D  F P R+  L++S     + F  F K               V S+++  +     +GTDHP
Subjt:  DNSITV----------------------------SVKDYRFTPIRANYLLAS-----VSFPLFIKV--------------VYSLTWGNA-----SGTDHP

Query:  IEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDSTVKLWT
        I P       +  F    F   G SGAINQ  YS+TGS+Y+TASKDGA++       + V +   +     +  V +    +D+R+VLS GKDSTVKLW 
Subjt:  IEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDSTVKLWT

Query:  WGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
         G  R+ K  L  + + ++  A+FND EEFV+SIDE SNEVV WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+SIRFWKE++
Subjt:  WGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

AT5G60940.2 Transducin/WD40 repeat-like superfamily protein2.7e-4750.25Show/hide
Query:  SGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDS
        +GTDHPI P       +  F    F   G SGAINQ  YS+TGS+Y+TASKDGA++       + V +   +     +  V +    +D+R+VLS GKDS
Subjt:  SGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQ--YSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQN--LQRDERYVLSCGKDS

Query:  TVKLWTWGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL
        TVKLW  G  R+ K  L  + + ++  A+FND EEFV+SIDE SNEVV WDA TA++VA+WPSNH G PRW+EHSP ES F++CG D+SIRFWKE++
Subjt:  TVKLWTWGRERLSKICL--ELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL

AT5G64730.1 Transducin/WD40 repeat-like superfamily protein2.5e-0531.73Show/hide
Query:  DERYVLSCGKDSTVKLWTWGRERLSKICLEL-LIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKS
        D  Y L+CGKD T++LW   R  L K        ++   V +DN +F     +   +V  WD  T  RV R    H G    ++ + + S  +S G D+S
Subjt:  DERYVLSCGKDSTVKLWTWGRERLSKICLEL-LIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKS

Query:  IRFW
        +R W
Subjt:  IRFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTTGCTCATCTTCGCGATCATAACCTCACCCAGGCAAGCTTTTC
TCTTCAAGCTTTTGATTATTTAACATCTGGGTCACCTCATTTCAGACTTTGTTTATCGAGTTTGGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTG
ATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCA
GTACCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTGCCATCGACTTTAGTATTGCAGTTTCATATGTAGGACTTGTGGAAAAGCATCCAACAGCCTTCTTGTG
TTTCTTCTTCTTCTTTTTGTTTCCTCCATACAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGGATA
ACTCCATAACTGTCAGCGTCAAAGATTATCGCTTCACTCCTATCAGAGCGAATTATCTTTTAGCCAGCGTATCGTTTCCTCTTTTCATCAAAGTAGTGTATTCACTAACG
TGGGGGAACGCTTCAGGAACGGATCATCCGATTGAGCCCACCTGTATATGTCAAATACGTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAAATAGGAAATAGTGGAGC
CATAAATCAGTATTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGATGGTGCAGTTCAGTTTATGGGATGGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAG
TGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGGATGAAAGGTATGTTCTTTCATGTGGAAAGGACTCGACTGTAAAGCTCTGGACGTGGGGACGGGAA
AGGCTGTCAAAAATATGTTTGGAGCTACTCATTATGCAATTGAGTGCTGTGTTCAATGATAATGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGGTTGTTAT
CTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGGTGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGA
CCGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTTGCTCATCTTCGCGATCATAACCTCACCCAGGCAAGCTTTTC
TCTTCAAGCTTTTGATTATTTAACATCTGGGTCACCTCATTTCAGACTTTGTTTATCGAGTTTGGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTG
ATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCA
GTACCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTGCCATCGACTTTAGTATTGCAGTTTCATATGTAGGACTTGTGGAAAAGCATCCAACAGCCTTCTTGTG
TTTCTTCTTCTTCTTTTTGTTTCCTCCATACAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGGATA
ACTCCATAACTGTCAGCGTCAAAGATTATCGCTTCACTCCTATCAGAGCGAATTATCTTTTAGCCAGCGTATCGTTTCCTCTTTTCATCAAAGTAGTGTATTCACTAACG
TGGGGGAACGCTTCAGGAACGGATCATCCGATTGAGCCCACCTGTATATGTCAAATACGTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAAATAGGAAATAGTGGAGC
CATAAATCAGTATTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGATGGTGCAGTTCAGTTTATGGGATGGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAG
TGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGGATGAAAGGTATGTTCTTTCATGTGGAAAGGACTCGACTGTAAAGCTCTGGACGTGGGGACGGGAA
AGGCTGTCAAAAATATGTTTGGAGCTACTCATTATGCAATTGAGTGCTGTGTTCAATGATAATGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGGTTGTTAT
CTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGGTGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGA
CCGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAGTGAGTGCATCTGGCTAGAAGATGAGAGCTGTTTCCTCATCCTGAAAATGTATGAGATGTAGCAATCTCTTGA
GCCCTCTACCACAAATCTTAGGCTTATATTTATTTCACTAATTCTTGAGAAGAGATGCTCTCATCTCTCCCATATAAAACTGTGGGGCAAAGCCCCAACTAAATCAGTGG
GCTT
Protein sequenceShow/hide protein sequence
MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQASFSLQAFDYLTSGSPHFRLCLSSLAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSS
VPSTFGSTQPSRASAIDFSIAVSYVGLVEKHPTAFLCFFFFFLFPPYSTVQDTKGSSKNFPKHETRHLSEHKDNSITVSVKDYRFTPIRANYLLASVSFPLFIKVVYSLT
WGNASGTDHPIEPTCICQIRFSAFFLQMFQKIGNSGAINQYSATGSMYVTASKDGAVQFMGWALVRNVFAPLLVHTVQRRQPVQNLQRDERYVLSCGKDSTVKLWTWGRE
RLSKICLELLIMQLSAVFNDNEEFVLSIDEPSNEVVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL