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Carg04815 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04815
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor MYB62-like
Genome locationCarg_Chr13:9127536..9128576
RNA-Seq ExpressionCarg04815
SyntenyCarg04815
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584357.1 40S ribosomal protein S7, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7197.16Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        IIRYYWIPRLIQKINQSSSLPPPPL PPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPS
        RGEMMNWATTA+TGDSGYPVAHCHMAET+WTHSDFTGYVP+
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPS

KAG7019943.1 hypothetical protein SDJN02_18910, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-100100Show/hide
Query:  MRRRSSGGALGLSKKTTSSSLPFLFTAKAAGISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQI
        MRRRSSGGALGLSKKTTSSSLPFLFTAKAAGISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQI
Subjt:  MRRRSSGGALGLSKKTTSSSLPFLFTAKAAGISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQI

Query:  GGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        GGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
Subjt:  GGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

XP_022924084.1 transcription factor MYB62-like [Cucurbita moschata]4.5e-7394.59Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        IIRYYWIPRLIQKINQSSSLPP   PPP PPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        RGEM NWATTA+TGDSGYPVAHCH AETNWTHSDFTGY PSMDELWQF
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

XP_023000999.1 transcription factor MYB62-like [Cucurbita maxima]6.1e-7089.19Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        +IRYYWIPRLIQKINQSS L      PPPPPPSELPGTSQAEMVSQSSYGFEA VTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        +GEMMNW TTA+TGD+GYPV+HCH+AETNWTH DFTGYVPSMDELWQF
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

XP_023520149.1 transcription factor MYB62-like [Cucurbita pepo subsp. pepo]4.5e-7393.24Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        IIRYYW+PRLIQKINQSS LPP    PPPPPPSELPGTSQAEMVSQSSYGFEAP TATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        +GEMMNWATTA+TGDSGYPVAHCHMAETNWTH+DFTGYVPSMDELWQF
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

TrEMBL top hitse value%identityAlignment
A0A0A0LQS6 Uncharacterized protein1.2e-4260Show/hide
Query:  GISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSS-SSSSGFQNY
        G S     IIR YW+PRL+QKINQS             PPSELP TS  EM SQ+S+GFEAP TA       TPLQIGGDLMGSSC SS  +  S +QNY
Subjt:  GISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSS-SSSSGFQNY

Query:  ENYGSFVNDY-WDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        ENY  FV DY  D  HG GEM+NW TTA+ GDSGYPV+HCH+AE NW   DFTGY+ ++DELWQF
Subjt:  ENYGSFVNDY-WDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

A0A1S3C8F6 transcription factor MYB108-like1.1e-4565Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSSSSS----SGFQNYENYGS
        IIR YWIPRLIQKINQS             PPSELP TS  EM SQ+S+GFEAP TA       TPLQIGGDLMGSSC+SSSSS     S FQNYEN+  
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSSSSS----SGFQNYENYGS

Query:  FVNDYW-DEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        FV DY+ D  HG GEM+NWATTA+ GDSGYPV+HCH+AE NW  SDFTGY+ ++DELWQF
Subjt:  FVNDYW-DEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

A0A5D3BI82 Transcription factor MYB108-like protein1.1e-4565Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSSSSS----SGFQNYENYGS
        IIR YWIPRLIQKINQS             PPSELP TS  EM SQ+S+GFEAP TA       TPLQIGGDLMGSSC+SSSSS     S FQNYEN+  
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTA-------TPLQIGGDLMGSSCNSSSSSS----SGFQNYENYGS

Query:  FVNDYW-DEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        FV DY+ D  HG GEM+NWATTA+ GDSGYPV+HCH+AE NW  SDFTGY+ ++DELWQF
Subjt:  FVNDYW-DEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

A0A6J1E866 transcription factor MYB62-like2.2e-7394.59Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        IIRYYWIPRLIQKINQSSSLPP   PPP PPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        RGEM NWATTA+TGDSGYPVAHCH AETNWTHSDFTGY PSMDELWQF
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

A0A6J1KLJ0 transcription factor MYB62-like3.0e-7089.19Show/hide
Query:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
        +IRYYWIPRLIQKINQSS L      PPPPPPSELPGTSQAEMVSQSSYGFEA VTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG
Subjt:  IIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCNSSSSSSSGFQNYENYGSFVNDYWDEEHG

Query:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF
        +GEMMNW TTA+TGD+GYPV+HCH+AETNWTH DFTGYVPSMDELWQF
Subjt:  RGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGGAGGAGCTCCGGAGGGGCCCTTGGACTGTCGAAGAAGACAACCTCCTCATCACTTCCATTTCTATTCACAGCGAAGGCCGCTGGAATCTCCTCGCCAAACGC
TCCGATTATTCGCTACTATTGGATCCCAAGATTAATTCAAAAAATCAACCAATCGTCGTCGTTGCCACCGCCGCCGCTGCCGCCGCCGCCGCCGCCACCGTCGGAGTTGC
CGGGTACTTCTCAAGCAGAGATGGTCTCCCAGAGTTCGTATGGTTTTGAAGCTCCGGTGACGGCGACGCCTCTGCAAATCGGTGGAGATTTGATGGGGAGTTCGTGTAAT
TCTTCCTCTTCTTCTTCTTCTGGTTTTCAAAATTACGAGAATTACGGGTCGTTTGTGAATGATTATTGGGACGAGGAGCATGGCAGGGGAGAGATGATGAACTGGGCAAC
GACGGCGATGACGGGGGATTCTGGTTACCCGGTTGCCCACTGCCACATGGCTGAAACTAATTGGACACACAGCGATTTTACCGGTTACGTGCCCAGTATGGATGAATTAT
GGCAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGGAGGAGCTCCGGAGGGGCCCTTGGACTGTCGAAGAAGACAACCTCCTCATCACTTCCATTTCTATTCACAGCGAAGGCCGCTGGAATCTCCTCGCCAAACGC
TCCGATTATTCGCTACTATTGGATCCCAAGATTAATTCAAAAAATCAACCAATCGTCGTCGTTGCCACCGCCGCCGCTGCCGCCGCCGCCGCCGCCACCGTCGGAGTTGC
CGGGTACTTCTCAAGCAGAGATGGTCTCCCAGAGTTCGTATGGTTTTGAAGCTCCGGTGACGGCGACGCCTCTGCAAATCGGTGGAGATTTGATGGGGAGTTCGTGTAAT
TCTTCCTCTTCTTCTTCTTCTGGTTTTCAAAATTACGAGAATTACGGGTCGTTTGTGAATGATTATTGGGACGAGGAGCATGGCAGGGGAGAGATGATGAACTGGGCAAC
GACGGCGATGACGGGGGATTCTGGTTACCCGGTTGCCCACTGCCACATGGCTGAAACTAATTGGACACACAGCGATTTTACCGGTTACGTGCCCAGTATGGATGAATTAT
GGCAATTTTAG
Protein sequenceShow/hide protein sequence
MRRRSSGGALGLSKKTTSSSLPFLFTAKAAGISSPNAPIIRYYWIPRLIQKINQSSSLPPPPLPPPPPPPSELPGTSQAEMVSQSSYGFEAPVTATPLQIGGDLMGSSCN
SSSSSSSGFQNYENYGSFVNDYWDEEHGRGEMMNWATTAMTGDSGYPVAHCHMAETNWTHSDFTGYVPSMDELWQF