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Carg04846 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04846
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTubulin beta chain
Genome locationCarg_Chr13:8971363..8973267
RNA-Seq ExpressionCarg04846
SyntenyCarg04846
Gene Ontology termsGO:0000226 - microtubule cytoskeleton organization (biological process)
GO:0000278 - mitotic cell cycle (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0005200 - structural constituent of cytoskeleton (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR000217 - Tubulin
IPR002453 - Beta tubulin
IPR003008 - Tubulin/FtsZ, GTPase domain
IPR013838 - Beta tubulin, autoregulation binding site
IPR036525 - Tubulin/FtsZ, GTPase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584321.1 Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. sororia]8.3e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

KAG7019912.1 Tubulin beta-6 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-77100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEDFYKQEESITRTREVVVIQEHFVDEQEIVSKHIV
        WAKGHYTEDFYKQEESITRTREVVVIQEHFVDEQEIVSKHIV
Subjt:  WAKGHYTEDFYKQEESITRTREVVVIQEHFVDEQEIVSKHIV

XP_022923716.1 tubulin beta chain-like [Cucurbita moschata]8.3e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

XP_023001101.1 tubulin beta chain-like [Cucurbita maxima]8.3e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

XP_023519684.1 tubulin beta chain-like [Cucurbita pepo subsp. pepo]8.3e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

TrEMBL top hitse value%identityAlignment
A0A0A0LTS3 Tubulin beta chain1.3e-5797.22Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG+SELQLERA+VYYNEASGGRYVPRAVLMDLEPGTMD+VRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

A0A5D3BJX8 Tubulin beta chain1.3e-5797.22Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG+SELQLERA+VYYNEASGGRYVPRAVLMDLEPGTMD+VRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

A0A6J1C5F4 Tubulin beta chain5.8e-5898.15Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIG+KFWEVVCDEHGIDPTGRYAG+SELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

A0A6J1E7I0 Tubulin beta chain4.0e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

A0A6J1KHP0 Tubulin beta chain4.0e-59100Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

SwissProt top hitse value%identityAlignment
P29514 Tubulin beta-6 chain4.3e-5893.52Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+S+LQLER +VYYNEAS GRYVPRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

Q43594 Tubulin beta-1 chain2.1e-5793.52Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

Q76FS3 Tubulin beta-6 chain7.3e-5894.44Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

Q9ZPN7 Tubulin beta-4 chain2.1e-5793.52Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

Q9ZRB2 Tubulin beta-1 chain2.1e-5793.52Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

Arabidopsis top hitse value%identityAlignment
AT1G20010.1 tubulin beta-5 chain2.4e-5688.99Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGH-SELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGN
        MREILHIQGGQCGNQIGSKFWEV+CDEHGID TGRY+G  ++LQLER +VYYNEASGGRYVPRAVLMDLEPGTMDS+R+GP+GQIFRPDNFVFGQSGAGN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGH-SELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGN

Query:  NWAKGHYTE
        NWAKGHYTE
Subjt:  NWAKGHYTE

AT1G75780.1 tubulin beta-1 chain1.7e-5789.91Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHS-ELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGN
        MREILH+QGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S +LQLER +VYYNEASGGRYVPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHS-ELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGN

Query:  NWAKGHYTE
        NWAKGHYTE
Subjt:  NWAKGHYTE

AT5G12250.1 beta-6 tubulin3.0e-5993.52Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY G+S+LQLER +VYYNEAS GRYVPRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

AT5G62690.1 tubulin beta chain 27.0e-5688.89Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTGRY G S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE

AT5G62700.1 tubulin beta chain 37.0e-5688.89Show/hide
Query:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHIQGGQCGNQIG+KFWEVVC EHGIDPTGRY G S+LQLER +VYYNEAS GR+VPRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTE
        WAKGHYTE
Subjt:  WAKGHYTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGAGATTCTGCATATTCAAGGAGGGCAATGCGGGAACCAAATCGGGTCGAAGTTCTGGGAAGTGGTTTGCGACGAGCATGGGATCGACCCGACTGGGCGCTACGC
CGGACATTCAGAACTCCAGCTGGAGAGAGCGAGTGTGTATTACAATGAAGCGAGCGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACCATGG
ACTCCGTTAGGACCGGGCCGTACGGCCAGATTTTCCGACCAGACAACTTCGTGTTCGGCCAATCCGGCGCCGGCAACAATTGGGCTAAAGGCCATTACACAGAAGACTTC
TATAAACAGGAAGAAAGCATAACTCGTACACGAGAAGTCGTGGTCATTCAAGAACATTTTGTGGACGAACAAGAAATTGTTTCTAAACACATCGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGAGATTCTGCATATTCAAGGAGGGCAATGCGGGAACCAAATCGGGTCGAAGTTCTGGGAAGTGGTTTGCGACGAGCATGGGATCGACCCGACTGGGCGCTACGC
CGGACATTCAGAACTCCAGCTGGAGAGAGCGAGTGTGTATTACAATGAAGCGAGCGGGGGAAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACCATGG
ACTCCGTTAGGACCGGGCCGTACGGCCAGATTTTCCGACCAGACAACTTCGTGTTCGGCCAATCCGGCGCCGGCAACAATTGGGCTAAAGGCCATTACACAGAAGACTTC
TATAAACAGGAAGAAAGCATAACTCGTACACGAGAAGTCGTGGTCATTCAAGAACATTTTGTGGACGAACAAGAAATTGTTTCTAAACACATCGTTTAG
Protein sequenceShow/hide protein sequence
MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGHSELQLERASVYYNEASGGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEDF
YKQEESITRTREVVVIQEHFVDEQEIVSKHIV