CuGenDBv2

Gene ID	Carg04853
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DDE Tnp4 domain-containing protein
Genome location	Carg_Chr13:8931264..8932151
RNA-Seq Expression	Carg04853
Synteny	Carg04853
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR040344 - Uncharacterized protein At3g17950-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6584313.1 hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-97

100

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

XP_016899568.1 PREDICTED: uncharacterized protein At3g17950 isoform X2 [Cucumis melo]

3.1e-93

95.21

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

XP_022924210.1 uncharacterized protein At3g17950 [Cucurbita moschata]

3.5e-97

99.47

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

XP_023001809.1 uncharacterized protein At3g17950-like [Cucurbita maxima]

1.6e-94

97.34

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT AAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFF NAVDLEGVVSADQQRNGR LFADGRVLPPAQT+EDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

XP_023520118.1 uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo]

7.8e-97

98.94

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH+AATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPP8 uncharacterized protein At3g17950 isoform X1

1.5e-93

95.21

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

A0A1S4DUB1 uncharacterized protein At3g17950 isoform X2

1.5e-93

95.21

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

A0A5D3BLI7 Putative nuclease HARBI1

1.5e-93

95.21

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT  AGGGSRKSKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV+ADQQRNGRSLFADGRVLPPAQT+EDTSA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

A0A6J1E8Y2 uncharacterized protein At3g17950

1.7e-97

99.47

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQT+EDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

A0A6J1KNQ0 uncharacterized protein At3g17950-like

7.9e-95

97.34

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQH AAT AAGGGSRKSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFF NAVDLEGVVSADQQRNGR LFADGRVLPPAQT+EDTSAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

SwissProt top hits

e value

%identity

Alignment

Q6DR24 Uncharacterized protein At3g17950

1.5e-37

51.71

Show/hide

Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR  + +      R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T E T  A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

Arabidopsis top hits

e value

%identity

Alignment

AT3G17950.1 unknown protein

1.0e-38

51.71

Show/hide

Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FR  S+       A + A+   +R++ + KR  + +      R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T E T  A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

AT3G17950.2 unknown protein

2.7e-23

44.77

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Query:  MGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG
        MG SF A   + FR  S+       A + A+   +R++ + KR  + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRFGD 
Subjt:  MGVSFPA---ITFRVPSQNR-DQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG

Query:  AFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGICSGGAG
        A + +A  +LE  V A   DQQ     R+LFADGRVLPPA     T E T  A +LCRF VSLTGICSGG G
Subjt:  AFFGNA-VDLEGVVSA---DQQ--RNGRSLFADGRVLPPAQ----TDEDTSAAGALCRFSVSLTGICSGGAG

AT5G02440.1 unknown protein

4.4e-05

52.73

Show/hide

Query:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA
        SP+ SS SSSDLD++S GSFF DRS +LG L+G+ SF  ++ R      DQ  AA
Subjt:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGV-SFPAITFRVPSQNRDQHAAA

Sequences

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CDS sequence

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ATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTCATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAG
GAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCCGAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTG
GTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTGGTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCG
GCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTTCTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGG
CCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAGATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCA
GCGGCGGTGCCGGCTAA

mRNA sequence

Show/hide mRNA sequence

TGAGAATAAATAAAAGAAAACAGACACAAAAAGGCTGCACGCACTAACAAATCATTTCAAAACCCATTTCTATTTTCATCTCTCTGTCTCTCAATTTCTTCTTCTTCTTT
GTTTTTACTTCTCATTCAAATTTCAGTCTCGGTTGCTATACCAAGAGACCTTAAGAGATGTTGAATCCGGCCAACGATCTGTTACCGCCGCCGTCGTCTCCGACCAATTC
ATCCATTTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTCTTCCATGACAGGAGCACCAGCTTGGGGACTCTAATGGGTGTTAGTTTCCCGGCGATTACCTTCC
GAGTGCCCTCCCAGAACCGAGACCAACACGCCGCCGCGACCGCCGCCGCTGGTGGTGGTTCCCGCAAGAGTAAGAAGCCAAAGAGAAAAACGACGGCAGCGCCGGCACTG
GTCGCAGATCGGAAACGGCGGTGGTGGCGGCTATGCAGGGATGACGGTGTTAAGCCGGCGTCTCTGGGCGAGTTTCTTGAGGTGGAACGGAGATTTGGGGACGGTGCTTT
CTTCGGCAACGCGGTGGATCTGGAAGGCGTAGTTTCGGCGGATCAGCAGAGGAATGGCCGGTCTTTGTTCGCCGATGGGAGGGTTCTTCCGCCGGCACAAACGGACGAAG
ATACGTCTGCGGCCGGCGCTCTATGCCGATTTTCTGTATCGCTCACCGGAATTTGCAGCGGCGGTGCCGGCTAAAATGTGGGATTTGATTTGTGAGAGTATATTTAAAAT
CTTATATTATATTTAATTAATCAAACGCTTGAATTAAGGTGG

Protein sequence

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MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQNRDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKP
ASLGEFLEVERRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVLPPAQTDEDTSAAGALCRFSVSLTGICSGGAG

Carg04853 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome