CuGenDBv2

Gene ID	Carg04879
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CDT1 domain-containing protein
Genome location	Carg_Chr13:8790881..8792368
RNA-Seq Expression	Carg04879
Synteny	Carg04879
Gene Ontology terms	GO:0007049 - cell cycle (biological process) GO:0050794 - regulation of cellular process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	IPR032054 - DNA replication factor Cdt1, C-terminal IPR038090 - DNA replication factor Cdt1, C-terminal WH domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6584288.1 CDT1-like protein b, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-61

97.67

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
        MTQTPEQLTPKKSMLPSSYVKTRKPANVGR CKAAKRVHDLSAMEGDNGALR+GVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDI 
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT

Query:  ERSEVEEQIEQLHELVPNWISKNLTPSGD
        ERSEVEEQIEQLHELVPNWISKNLTPSGD
Subjt:  ERSEVEEQIEQLHELVPNWISKNLTPSGD

KAG7019881.1 CDT1-like protein a, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

8.2e-96

100

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
        MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDIT

Query:  ERSEVEEQIEQLHELVPNWISKNLTPSGDHRPDGRLGIGSGKDCLHLRSWQKVTTSSCLLDYICRRQLQCPLEAIKASCF
        ERSEVEEQIEQLHELVPNWISKNLTPSGDHRPDGRLGIGSGKDCLHLRSWQKVTTSSCLLDYICRRQLQCPLEAIKASCF
Subjt:  ERSEVEEQIEQLHELVPNWISKNLTPSGDHRPDGRLGIGSGKDCLHLRSWQKVTTSSCLLDYICRRQLQCPLEAIKASCF

XP_008437096.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo]

1.2e-33

57.42

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   +GV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

XP_008437112.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo]

1.2e-33

57.42

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   +GV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

XP_038893531.1 CDT1-like protein a, chloroplastic [Benincasa hispida]

1.8e-34

57.86

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGV--------AEKKASVD----------------------VKNVVRV
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   + V         EKK  +D                      +  +VRV
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGV--------AEKKASVD----------------------VKNVVRV

Query:  VYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        VYNIFKSVNC+SI KEELVH+I+M+ LDITER EVE+QIEQL +LVPNWISK  TPSGD
Subjt:  VYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQM9 CDT1 domain-containing protein

8.2e-33

55.7

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIG-----------------------------VAEKKASVDVKNVVRVV
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S ME DNG   +G                             V  +++S  +  +V VV
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIG-----------------------------VAEKKASVDVKNVVRVV

Query:  YNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        YNIFKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  YNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

A0A1S3AT80 CDT1-like protein a, chloroplastic isoform X2

5.7e-34

57.42

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   +GV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

A0A1S3ATS0 CDT1-like protein a, chloroplastic isoform X1

5.7e-34

57.42

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   +GV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

A0A5D3BIY5 CDT1-like protein a

5.7e-34

57.42

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI
        MTQTP QLTPK+SMLPSS VKTRKPA+VG  CK AKR  + S MEGDNG   +GV +                          +++S  +  +V VVYNI
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAE--------------------------KKASVDVKNVVRVVYNI

Query:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        FKSVNC+SI KEELVH+I+M+ LDITER EVEE+IEQL +LVPNWISK LT SGD
Subjt:  FKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

A0A6J1GR86 CDT1-like protein a, chloroplastic

9.1e-32

55.77

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Query:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGV--------AEKK-------------------ASVDVKNVVRVVYN
        +TQTP Q TPK+SMLPSS VK RK A+VG  CK AKR  + S MEGDNG L   V         EK+                    S  +  +VRV+YN
Subjt:  MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGV--------AEKK-------------------ASVDVKNVVRVVYN

Query:  IFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        +FKSVNCASI KEELVH+I+M+SLDITER EVEE+IEQL + VP+WISK LTPSGD
Subjt:  IFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

3.9e-08

36.46

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Query:  SAMEGDNGA-----LRIGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        S  EGDN +     L+  +   K   +  N   +V +++ +F S N   I KEEL+++I+ + ++IT+R EVEEQ+  + +LVP+WIS+    SGD
Subjt:  SAMEGDNGA-----LRIGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

Q9SJW9 CDT1-like protein a, chloroplastic

3.6e-09

35.79

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Query:  AKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        A +  +  A+E  N A+ +    +K    +  +  V++ + +S+    I KEELVH+I+    DIT+R EVEEQ+  L E+VP W+S+  + SGD
Subjt:  AKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

2.5e-10

35.79

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Query:  AKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        A +  +  A+E  N A+ +    +K    +  +  V++ + +S+    I KEELVH+I+    DIT+R EVEEQ+  L E+VP W+S+  + SGD
Subjt:  AKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

2.8e-09

36.46

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Query:  SAMEGDNGA-----LRIGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD
        S  EGDN +     L+  +   K   +  N   +V +++ +F S N   I KEEL+++I+ + ++IT+R EVEEQ+  + +LVP+WIS+    SGD
Subjt:  SAMEGDNGA-----LRIGVAEKKASVDVKN---VVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIEQLHELVPNWISKNLTPSGD

Sequences

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CDS sequence

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ATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAATGCTGCCGAGTTCGTACGTGAAAACGAGGAAACCCGCAAATGTGGGAAGATATTGTAAAGCTGCAAAACG
GGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGATCGGCGTGGCTGAAAAGAAAGCTTCTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACA
TTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAACTCGTGCACGAGATTATGATGAGTAGTCTTGATATTACTGAGAGAAGTGAAGTGGAAGAGCAAATTGAG
CAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATCATCGACCCGATGGAAGACTTGGAATCGGTAGTGGCAAGGACTGCTTGCATTT
GAGAAGCTGGCAAAAGGTCACCACATCGTCTTGCTTGTTAGATTACATCTGTAGACGACAATTGCAGTGCCCTTTAGAAGCTATTAAGGCATCCTGTTTTTAG

mRNA sequence

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TCGTAGAACTGAAGGCGTAAGAATTTTGGTTGAAGCTTCATAATGACACAAACCCCAGAACAGTTGACACCAAAGAAATCAATGCTGCCGAGTTCGTACGTGAAAACGAG
GAAACCCGCAAATGTGGGAAGATATTGTAAAGCTGCAAAACGGGTTCACGACTTGTCTGCCATGGAAGGCGACAATGGTGCATTGAGGATCGGCGTGGCTGAAAAGAAAG
CTTCTGTTGATGTGAAGAATGTTGTTCGTGTTGTCTACAACATTTTCAAGTCTGTTAATTGCGCTTCGATTAACAAGGAAGAACTCGTGCACGAGATTATGATGAGTAGT
CTTGATATTACTGAGAGAAGTGAAGTGGAAGAGCAAATTGAGCAGCTCCATGAGTTGGTTCCCAATTGGATCTCCAAGAACTTGACACCTAGTGGGGATCATCGACCCGA
TGGAAGACTTGGAATCGGTAGTGGCAAGGACTGCTTGCATTTGAGAAGCTGGCAAAAGGTCACCACATCGTCTTGCTTGTTAGATTACATCTGTAGACGACAATTGCAGT
GCCCTTTAGAAGCTATTAAGGCATCCTGTTTTTAGGCAGCATGCATTTTATCATTTATGTTTGTCTGCTCATTATTATATGTATATCTAGATATTGCTCGGAATCTCTTA
TTTTCACTAAACGCGTCAAACTTTCTAACCGCCCAAGTCCACACCCTTATAAAG

Protein sequence

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MTQTPEQLTPKKSMLPSSYVKTRKPANVGRYCKAAKRVHDLSAMEGDNGALRIGVAEKKASVDVKNVVRVVYNIFKSVNCASINKEELVHEIMMSSLDITERSEVEEQIE
QLHELVPNWISKNLTPSGDHRPDGRLGIGSGKDCLHLRSWQKVTTSSCLLDYICRRQLQCPLEAIKASCF

Carg04879 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome