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Carg04882 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04882
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncoiled-coil domain-containing protein 12-like
Genome locationCarg_Chr13:8772946..8774246
RNA-Seq ExpressionCarg04882
SyntenyCarg04882
Gene Ontology termsGO:0005684 - U2-type spliceosomal complex (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domainsIPR013169 - mRNA splicing factor Cwf18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]3.6e-45100Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
KAG7019878.1 Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-45100Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
XP_022923663.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]1.8e-4498.97Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKLVPP LPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
XP_023520254.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]3.6e-45100Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]6.7e-4497.94Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
TrEMBL top hitse value%identityAlignment
A0A1S3ATB1 coiled-coil domain-containing protein 125.2e-4293.81Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKL PPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
A0A5D3BJ95 Coiled-coil domain-containing protein 125.2e-4293.81Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKL PPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
A0A6J1E719 coiled-coil domain-containing protein 12-like8.6e-4598.97Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKLVPP LPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
A0A6J1GST8 coiled-coil domain-containing protein 12-like3.3e-4497.94Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X14.3e-4497.94Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
        MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
SwissProt top hitse value%identityAlignment
Q8R344 Coiled-coil domain-containing protein 123.9e-1040.43Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        ++ RNYVP D++L+  + VP   P       K +   A   P ++E    N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
Q8WUD4 Coiled-coil domain-containing protein 128.6e-1039.36Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        ++ RNYVP D++L++ + VP   P       K +   A   P ++E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
Arabidopsis top hitse value%identityAlignment
AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).2.3e-3478.26Show/hide
Query:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        MKFRNYVP  KELQ+GKL PP LPKFEDP+   PP  + KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATT
AAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTAT
ATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGA
mRNA sequenceShow/hide mRNA sequence
AGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGA
ACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTC
AGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAGTATGCCGCCCAAGTTATGAGT
TCTCCAGTATTACAGTCGCAATATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTT
TTAATTTATCTATTGTGGCTCTCATGGTGTTCCTTGACTAACTATGCCCCATAGCATATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTG
TACTTCATCTTATCTTCATTTTGAACCGTTTTCTTATTTTT
Protein sequenceShow/hide protein sequence
MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE