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Carg04899 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04899
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome locationCarg_Chr08:343559..345740
RNA-Seq ExpressionCarg04899
SyntenyCarg04899
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592865.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.2e-83100Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

XP_022960100.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]1.0e-8298.86Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNP SDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

XP_023005089.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]9.5e-8197.14Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNPSSDSGTAPNQDPPLG EE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]6.0e-8398.86Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNP SDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]6.0e-5974.07Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+SGVT SVS S FS++ +KPKITH+SS           PSNLKFR IS   P GSPRF+ RCSSGDGDSRTVL+AFFLGKALAEALTER+EST+GEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        GIGRLQAEQQKQI DFQEEV+ERAKKA++KAARDAKEVQGP+  SSSI SPTIEV SS T STN+QQLSNP  DS T  NQDPPLG +E
Subjt:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein6.1e-4967.74Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHF-----------SSPSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+SGVT SVS S FS++ +KPKITH+           S+PSNLKFR IS   P G  RF+ RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHF-----------SSPSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLG
        GIGRLQAEQQKQI DFQ+EV+ERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS TS       S+P +DS +  NQDP LG
Subjt:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLG

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X18.8e-4866.13Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+S +T SVS S FS++ +KPKITH+SS           PSNL+FR IS   P GS R + RCSSGDGDSRT+L+AFFLGKALAEALTER+ESTIGEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLG
        GIG+LQAEQQKQI DFQ+EV+ERAKKA+EKAAR+AKEVQ P+  SSS+ SPTIEV+SS TS       S+P +DS +  NQDPPLG
Subjt:  GIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLG

A0A6J1H854 uncharacterized protein At4g13200, chloroplastic-like4.9e-8398.86Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNP SDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like2.0e-4766.67Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPIS--------PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQ
        M+SGV  SVSPS FS+L ++ KITH SSPS ++FR  S        P GS RF+  CSSGDGD+RTVL+AFFLGKA AE LTERVEST+GEVLS IGRLQ
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPIS--------PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQ

Query:  AEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        AE+Q+QI+DFQEEV+ERAKKA+EKA RDAKE QGPI  SSSI S TIEV SS T S+N QQ S+ ++ S T  NQDPP G EE
Subjt:  AEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like4.6e-8197.14Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
        MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNPSSDSGTAPNQDPPLG EE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE

SwissProt top hitse value%identityAlignment
P73628 Thylakoid protein sll17695.2e-0540.28Show/hide
Query:  VLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISS
        VL AFFLG+A AE L+E+VE  +   LS +G+  AEQ++ +  F  EV  RA     +       V GP+S+
Subjt:  VLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISS

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic9.7e-2042.7Show/hide
Query:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE
        SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAE
Subjt:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE

Query:  QQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPSSDSGTAPNQD
        QQKQ+ + QEEVLERAKKA+E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Subjt:  QQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPSSDSGTAPNQD

Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein6.9e-2142.7Show/hide
Query:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE
        SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAE
Subjt:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE

Query:  QQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPSSDSGTAPNQD
        QQKQ+ + QEEVLERAKKA+E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Subjt:  QQKQILDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPSSDSGTAPNQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGTGGGGTTACACCTTCAGTTTCCCCCTCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGAT
TTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGTTCTTAATGCCTTTTTCTTGGGAAAAGCTTTAGCAGAAGCCTTAA
CCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAGGAGGAGGTTTTAGAAAGAGCC
AAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAGGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCGACTAG
TTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
TGAGAAAGTGACGCCACGCATTTTTCAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCCTCCCATTTCTCAATTCTTCACTCTAAACCAAAG
ATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGT
TCTTAATGCCTTTTTCTTGGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAAC
AAAAACAAATTCTTGATTTCCAGGAGGAGGTTTTAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAGGAAGTACAAGGCCCGATCTCTTCTTCTTCT
TCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCGACTAGTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCC
TCCTCTTGGTGGCGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTATATATAGAAGACTTATAGTGAATGTAACCTTTATATACTGATGATGGGTTGGG
TTGGTTATTTAGTCTCAAAGTCATATAGTAATTGCCTTCTTAAGGTTCGTCTTTCAGATATCTTATGAGATTCTTGACGTGATCGAACACAACCCGTTTGGTAACATTAT
TATTTGAAATTTTGAATATAGGAACGAGTT
Protein sequenceShow/hide protein sequence
MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVLERA
KKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPSSDSGTAPNQDPPLGGEE