; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04923 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04923
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor IBH1
Genome locationCarg_Chr08:496743..497198
RNA-Seq ExpressionCarg04923
SyntenyCarg04923
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]4.9e-4170.39Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY
        MAS+SG TP+ S+SS+LRLARTFLRSF+ IKS+ P  A   S  ELRRRSRRIK+ AYSSMAR AGP+ AWARALLFKL TRARH TL+ RRR    S  
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY

Query:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN
         DD VGKLRRL+PGG+ MDVCTLLEET +YI CLSAQVKVM AI  H  STN
Subjt:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN

KAG6592893.1 hypothetical protein SDJN03_12369, partial [Cucurbita argyrosperma subsp. sororia]5.6e-4598.11Show/hide
Query:  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPDDHVGKLR
        MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMAR AGPQRAWARALLFKLNTRARH TLMRRRRSTMPSAYPDDHVGKLR
Subjt:  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPDDHVGKLR

Query:  RLLPGG
        RLLPGG
Subjt:  RLLPGG

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-73100Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY
        MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY

Query:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
Subjt:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]4.0e-4371.14Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD
        S+S  T +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RH TLMRR+R   PS  PD
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]6.1e-6894.7Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY
        MA ESG TPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARH T MRRR STMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY

Query:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        PDDHVGKLRRL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein2.1e-3464.19Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD
        S+S  T +NS+SS L  ART              T AS    +L+R+SRRIK+AAYSSMARVAG +RAWARALLF+L+TR RH TLMRR+R   PS   D
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLS
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+ HHLS
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLS

A0A1S3CLD3 transcription factor IBH11.9e-4371.14Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD
        S+S  T +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RH TLMRR+R   PS  PD
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A5D3BPL2 Transcription factor IBH11.9e-4371.14Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD
        S+S  T +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RH TLMRR+R   PS  PD
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A6J1KS83 transcription factor IBH13.0e-6894.7Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY
        MA ESG TPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARH T MRRR STMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAY

Query:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        PDDHVGKLRRL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  PDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

A0A7N2RCD6 Uncharacterized protein1.6e-2651.72Show/hide
Query:  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRR---RSTMPSAYPDD--H
        +N++S  ++ AR F+R+  +++   P   +S S  E+R+RS+RIKIAAYSSMA   G +RAW+RA+LFKL  RARH  +MRRR   +  + +  P D   
Subjt:  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRR---RSTMPSAYPDD--H

Query:  VGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
          KLR+L+PGG  MD+C+LLEETA YI CLS QVKVM  IA HLS
Subjt:  VGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH19.0e-1438.27Show/hide
Query:  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTR------ARHGTLMRRRRSTMPSAYPDDHVG------
        LA  FLR+ SRI    P T          RR+R I+ AAYSSMAR A P+RAW+RALL +   R       R   L+RRR    P+  P    G      
Subjt:  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTR------ARHGTLMRRRRSTMPSAYPDDHVG------

Query:  ------------------------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
                                 LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  ------------------------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q7XR02 Transcription factor IBH15.3e-1438.27Show/hide
Query:  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTR------ARHGTLMRRRRSTMPSAYPDDHVG------
        LA  FLR+ SRI    P T          RR+R I+ AAYSSMAR A P+RAW+RALL ++  R       R   L+RRR    P+  P    G      
Subjt:  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTR------ARHGTLMRRRRSTMPSAYPDDHVG------

Query:  ------------------------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
                                 LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  ------------------------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q9M9L6 Transcription factor bHLH1504.9e-0431.75Show/hide
Query:  AFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPS-------------------AYPDDHVGKLRRLLPGGDGMDVCTL
        A +  RRS  ++  A   +A  A     W+RA+L      +R GT +RRRR+T P+                   +   + V  L  L+PG     +  L
Subjt:  AFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPS-------------------AYPDDHVGKLRRLLPGGDGMDVCTL

Query:  LEETADYIHCLSAQVKVMNAIAHHLS
        L+ETADYI  L  QV+ M A++  LS
Subjt:  LEETADYIHCLSAQVKVMNAIAHHLS

Q9SKX1 Transcription factor IBH19.0e-1439.42Show/hide
Query:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHGTLMRRRRSTMPSAYPDDHVGKLRRLL
        FL+S S ++ + P     +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R +     +RRRS   +   ++   +LR L+
Subjt:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHGTLMRRRRSTMPSAYPDDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 16.4e-1539.42Show/hide
Query:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHGTLMRRRRSTMPSAYPDDHVGKLRRLL
        FL+S S ++ + P     +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R +     +RRRS   +   ++   +LR L+
Subjt:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHGTLMRRRRSTMPSAYPDDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 13.5e-0531.75Show/hide
Query:  AFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPS-------------------AYPDDHVGKLRRLLPGGDGMDVCTL
        A +  RRS  ++  A   +A  A     W+RA+L      +R GT +RRRR+T P+                   +   + V  L  L+PG     +  L
Subjt:  AFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPS-------------------AYPDDHVGKLRRLLPGGDGMDVCTL

Query:  LEETADYIHCLSAQVKVMNAIAHHLS
        L+ETADYI  L  QV+ M A++  LS
Subjt:  LEETADYIHCLSAQVKVMNAIAHHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGAATCCGGTACAACCCCGATGAATTCCTCATCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCGAAGACCCACCAC
CGCTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGTGGCTGGGCCACAACGAGCATGGGCTAGAG
CCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATGGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACCCCGACGACCATGTCGGGAAGCTCCGCCGC
TTACTTCCGGGCGGTGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCA
TTTATCAACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGAATCCGGTACAACCCCGATGAATTCCTCATCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCGAAGACCCACCAC
CGCTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGTGGCTGGGCCACAACGAGCATGGGCTAGAG
CCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATGGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACCCCGACGACCATGTCGGGAAGCTCCGCCGC
TTACTTCCGGGCGGTGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCA
TTTATCAACAAATTGA
Protein sequenceShow/hide protein sequence
MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPDDHVGKLRR
LLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN